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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
Blood and adipose tissue DNA methylation in adults born preterm with a very low birth weight - a sibling comparison
Helena H Hauta-Alus1,2,3, Justiina Ronkainen4, Juho Kuula2,3,5
1Clinical Medicine Research Unit, MRC Oulu, Oulu University Hospital and University of Oulu, Oulu, Finland.
Insights
Adults born very low birth weight (VLBW) show lasting epigenetic changes in adipose tissue, specifically in genes related to lipid metabolism and neurodevelopment. These DNA methylation differences highlight potential long-term health implications for VLBW individuals.
Area of Science:
- Epigenetics
- Human Development
- Metabolic Health
Background:
- Preterm birth and very low birth weight (VLBW) are associated with increased risks for adverse health outcomes.
- Epigenetic modifications, such as DNA methylation (DNAm), are hypothesized to mediate these risks.
- Understanding tissue-specific DNAm patterns in VLBW adults is crucial for identifying long-term health consequences.
Purpose of the Study:
- To investigate differences in DNA methylation (DNAm) between adults born very low birth weight (VLBW) and their siblings.
- To compare DNAm patterns in blood and adipose tissue to identify tissue-specific epigenetic modifications.
- To explore the biological pathways affected by these potential DNAm differences.
Main Methods:
- Study included 75 adults born preterm with VLBW and 73 sibling controls.
- DNA methylation at CpG sites in blood and adipose tissue was assessed using Illumina EPIC 850K array.
- Pathway analysis was performed using QIAGEN ingenuity pathway analysis (IPA).
Main Results:
- No significant differences in DNA methylation were observed in blood samples.
- In adipose tissue, 458 CpG sites showed differential methylation between VLBW adults and siblings (FDR p < 0.05).
- Differentially methylated sites were associated with genes involved in lipid metabolism (e.g., FADS2) and neural development (e.g., KIF26A), and enriched in 81 biological pathways.
Conclusions:
- VLBW adults exhibit distinct, tissue-specific DNA methylation patterns compared to their siblings.
- These epigenetic alterations are concentrated in pathways critical for lipid metabolism, neurodevelopment, and cardiometabolic regulation.
- The findings suggest persistent, tissue-specific epigenetic modifications in individuals born with VLBW, potentially impacting long-term health.
Background:
Preterm birth and very low birth weight (VLBW; <1500 g) increase risks for poor health outcomes, potentially mediated by epigenetic modifications such as DNA methylation (DNAm). We hypothesized that DNAm differs between VLBW adults and their siblings in blood and adipose tissue.
Methods:
We studied 75 adults born preterm with VLBW and 73 same-sex sibling controls from the Adults Born Preterm Sibling Study. DNAm at cytosine-guanine dinucleotide (CpG) sites in blood and adipose tissue was assessed using Illumina EPIC 850K at a mean age of 29 years. Biological pathways were investigated with QIAGEN ingenuity pathway analysis (IPA).
Results:
No differences were observed in blood DNAm. In adipose tissue, 458 CpG sites were differentially methylated (FDR p < 0.05) between VLBW and siblings. Top sites were annotated to genes related to lipid metabolism (cg00264176 (FADS2), 0.077 (0.007), FDR p = 3.24 × 10-14) and neural development (cg08277679 (KIF26A), 0.053 (0.005), FDR p = 8.22 × 10-12). IPA identified enrichment for 81 pathways (FDR p < 0.05).
Conclusion:
Our results suggest tissue-specific DNAm differences in VLBW adults compared to their siblings. The changes cluster in pathways related to lipid metabolism, neurodevelopment, and cardiometabolic regulation, suggesting lasting tissue-specific epigenetic modifications in VLBW adults.
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