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Open-source sub-nanometer stabilization system for super-resolution fluorescence microscopy
Florencia Edorna1,2, Florencia D Choque1,2, Giovanni Ferrari1,3
1Centro de Investigaciones en Bionanociencias (CIBION), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina.
Light, Science & Applications
|November 19, 2025
Summary
We developed an active stabilization system for super-resolution microscopy, achieving sub-nanometer precision for hours. This system enhances techniques like MINFLUX and RASTMIN for visualizing single molecules.
Area of Science:
- Optical microscopy
- Nanotechnology
- Biophysics
Background:
- Super-resolution fluorescence microscopy achieves 1-10 nm resolution for visualizing individual molecules.
- High precision requires rigorous sample drift control, especially for techniques like MINFLUX and RASTMIN.
- Active drift correction is essential for nanometer-scale resolution in microscopy.
Purpose of the Study:
- To present an active stabilization system for super-resolution microscopy.
- To achieve sub-nanometer precision stabilization for extended periods.
- To provide an adaptable and open-source solution for enhanced microscopy performance.
Main Methods:
- Development of a simple optical design for an active stabilization module.
- Integration of open-source control software with a user-friendly graphical interface.
- Demonstration with p-MINFLUX and RASTMIN measurements in diverse experimental setups.
Main Results:
- The stabilization system delivers sub-nanometer precision for hours.
- The system is adaptable as a module for various fluorescence microscopes.
- Measurements reached the theoretical Cramér-Rao Bound, resolving ~10 nm distances in DNA origami.
Conclusions:
- The active stabilization system significantly improves super-resolution microscopy precision.
- The open-source nature and adaptability facilitate widespread adoption.
- The system enables robust visualization of nanoscale structures in biological environments.

