Related Experiment Video
Updated: Jan 10, 2026

Liquid-cell Transmission Electron Microscopy for Tracking Self-assembly of Nanoparticles
Published on: October 16, 2017
Nonequilibrium Acceleration and Time Forecasting of Cluster-Mediated Self-Assembly
Roy Furman1, Michael Faran2, Gili Bisker2,3,4,5,6
1School of Electrical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978, Israel.
Nonequilibrium driving speeds up self-assembly by improving efficiency and predictability. Directed interactions in simulations enhance predictive accuracy, offering a robust strategy for complex assembly processes.
Area of Science:
- Physical Chemistry
- Computational Science
- Materials Science
Background:
- Nonequilibrium driving can overcome limitations in self-assembly by balancing stability and accessibility.
- Previous studies explored this principle theoretically, but systematic evaluation in realistic simulations is needed.
Purpose of the Study:
- To investigate the effectiveness and predictability of nonequilibrium driving in self-assembly simulations.
- To compare different simulation methods and interaction types for self-assembly efficiency.
Main Methods:
- Utilized Virtual-Move Monte Carlo (VMMC) with directed and undirected specific interactions.
- Employed an undirected single-particle Monte Carlo (SPMC) as a benchmark.
- Assessed the Stochastic Landscape Method (SLM) for forecasting assembly dynamics.
Main Results:
- Nonequilibrium driving consistently reduced the time to first assembly across all tested models.
- Predictive power of SLM varied, with directed interactions in VMMC showing higher predictability than undirected dynamics or SPMC.
- Analysis of energy trajectories elucidated the physical basis for differences in predictability.
Conclusions:
- Nonequilibrium driving is a robust strategy for enhancing self-assembly efficiency.
- Directed binding interactions are crucial for improving the predictability of self-assembly processes.
- Understanding interaction dynamics is key to optimizing predictive tools like SLM for complex self-assembly.
Related Concept Videos
Assembly of Cytoskeletal Filaments
Spindle Assembly
In most cells, centrosomes are the primary microtubule nucleation centers. In the centrosome-mediated pathway, the G2-prophase transition triggers centrosome maturation and increased microtubule nucleation. Progressive nucleation results in a...
Actin Polymerization and Cell Motility
Actin cytoskeleton dynamics can produce pushing, pulling, and resistance forces that help the cell to migrate....
Protein Complex Assembly
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Actin Polymerization
The nucleation phase involves forming a stable nucleus consisting of three actin monomers to form a new actin filament. Actin-binding proteins such as formins and Arp2/3 complex help filament growth post-nucleation. The Formins form straight...
Forces Acting on Chromosomes
Microtubules and motor proteins exert two types of forces on...

