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oShark: A Modified Nuclease-Resistant Light-Up Aptamer.

Janine Kehrli1, Roger Cubi1, Tanushree Gupta2

  • 1Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR 9002, F-67000 Strasbourg, France.

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|December 3, 2025
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Summary
This summary is machine-generated.

Researchers developed oShark, a modified light-up RNA aptamer, enhancing stability in biological environments. This engineered aptamer maintains function and fluorescence, paving the way for advanced molecular detection tools.

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • RNA Aptamer Technology

Background:

  • Light-up RNA aptamers offer selective binding and fluorescence activation for molecular detection.
  • RNA backbone instability in extracellular environments limits aptamer applications.
  • Chemical modifications can improve stability but may hinder aptamer folding and function.

Purpose of the Study:

  • To develop a chemically modified light-up RNA aptamer with enhanced stability for extracellular applications.
  • To maintain aptamer integrity, folding, and fluorogen activation despite chemical modifications.
  • To create a novel dual light-up aptamer system.

Main Methods:

  • Directed evolution strategy.
  • Microfluidic-assisted screening.
  • Rational design and sequence optimization.

Main Results:

  • Developed oShark, a fluorinated light-up aptamer activating the Gemini-552 dye.
  • oShark demonstrated preserved integrity and function in challenging extracellular media.
  • Engineered Lemon-oShark, the first modified dual light-up aptamer, by fusing oShark with Mango-II.

Conclusions:

  • oShark represents a significant advancement in stabilizing RNA aptamers for biological applications.
  • The developed aptamers maintain high fluorescence and brightness comparable to unmodified versions.
  • This work enables new possibilities for in vivo and in vitro molecular sensing using robust RNA aptamers.