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A Streamlined Approach for Mass Spectrometry-Based Proteomics Using Selected Tissue Regions
Published on: April 18, 2025
Integrated proteomic analysis identifies TYMS-dependent AMPK-mTOR signaling in pancreatic neuroendocrine tumors
Vinod Vijayakurup1, Benjamin Meyer1, Syeda Rida Rizvi1
1Department of Anatomy and Cell Biology, University of Florida, Gainesville, FL 32610, USA.
Abstract:
While regulated TYMS expression is essential for DNA synthesis, sustained TYMS overexpression is a key biomarker for drug resistance and poor prognosis in patients with advanced solid tumors, including pancreatic neuroendocrine tumors (PanNETs). Using proteomic analysis, we observed that TYMS regulates proteins involved in energy-dependent metabolism. Further, we demonstrate that TYMS directly impacts the AMPK-mTOR signaling pathway, a critical axis governing the metabolic adaptation of cancer. TYMS inhibition activates AMPK signaling in PanNET cells, while TYMS overexpression suppresses AMPK activation and enhances mTOR signaling in PanNETs arising in TYMS-overexpressing Men1 -/- null transgenic mouse model. In addition, TYMS expression positively correlates with mTOR-associated genes in patients with PanNET. TYMS levels also impact the efficacy of everolimus, an FDA-approved mTOR inhibitor for patients with PanNET, underscoring the clinical significance of our findings. In summary, our study uncovers a new role of TYMS linking nucleotide metabolism to growth signaling pathways via the regulation of the AMPK-mTOR axis.
Insights
Thymidylate synthase (TYMS) overexpression in pancreatic neuroendocrine tumors (PanNETs) links nucleotide metabolism to cancer growth by regulating the AMPK-mTOR pathway, impacting drug resistance and prognosis.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Metabolism
Background:
- Sustained thymidylate synthase (TYMS) overexpression is a biomarker for drug resistance and poor prognosis in advanced solid tumors, including pancreatic neuroendocrine tumors (PanNETs).
- TYMS is crucial for DNA synthesis, but its overexpression suggests roles beyond nucleotide metabolism.
Purpose of the Study:
- To investigate the role of TYMS in regulating cancer metabolism and signaling pathways in PanNETs.
- To explore the link between TYMS, the AMPK-mTOR axis, and therapeutic response in PanNETs.
Main Methods:
- Proteomic analysis to identify TYMS-regulated proteins involved in metabolism.
- Investigating the impact of TYMS inhibition and overexpression on the AMPK-mTOR signaling pathway in PanNET cells and a transgenic mouse model.
- Correlating TYMS expression with mTOR-associated genes in patient-derived PanNET samples.
Main Results:
- TYMS regulates proteins involved in energy-dependent metabolism.
- TYMS directly impacts the AMP-activated protein kinase (AMPK)-mammalian target of rapamycin (mTOR) signaling pathway.
- TYMS inhibition activates AMPK signaling, while TYMS overexpression suppresses AMPK and enhances mTOR signaling in PanNETs.
- TYMS expression positively correlates with mTOR-associated genes and impacts everolimus efficacy in PanNET patients.
Conclusions:
- TYMS plays a novel role in linking nucleotide metabolism to cancer growth signaling through the regulation of the AMPK-mTOR axis.
- TYMS levels are clinically significant, affecting prognosis and response to mTOR inhibitors like everolimus in PanNET patients.
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