The prevalence and molecular epidemiology of Clostridioides difficile in hospital-based pediatric populations in China
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Updated: Jan 9, 2026

Cefoperazone-treated Mouse Model of Clinically-relevant Clostridium difficile Strain R20291
Published on: December 10, 2016
Yu Zeng1,2, Yining Shen1, Fangfang Fan1,2
1Department of Laboratory Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Insights
Asymptomatic children carry Clostridioides difficile, spreading antimicrobial resistance. Enhanced surveillance and antimicrobial stewardship are crucial in Chinese hospitals to manage this reservoir and prevent resistance.
Area of Science:
- Clinical Microbiology and Infectious Diseases
- Molecular Epidemiology
- Antimicrobial Resistance (AMR)
Background:
- Clostridioides difficile (C. difficile) is a significant cause of healthcare-associated infections.
- Understanding its prevalence and characteristics in pediatric populations is vital for infection control.
- The role of asymptomatic carriers in the epidemiology of C. difficile and AMR is not fully elucidated.
Purpose of the Study:
- To investigate the prevalence, molecular epidemiology, AMR, and genetic relatedness of C. difficile in Chinese children.
- To identify risk factors and transmission dynamics associated with C. difficile colonization and infection.
- To inform targeted antimicrobial stewardship and surveillance strategies.
Main Methods:
- A multicenter cross-sectional study involving 1,442 stool samples from pediatric populations.
- Isolation and identification of C. difficile, followed by multilocus sequence typing (MLST) and core genome phylogenetic analysis.
- Antimicrobial susceptibility testing and molecular analysis of resistance genes and mobile genetic elements.
Main Results:
- A C. difficile prevalence of 16.8% was found, with 13.0% asymptomatic carriage and 0.98% infection.
- ST3 was the predominant sequence type, and lineage VI was most common in infection cases.
- High clindamycin resistance (64.5%) and moxifloxacin resistance (10.7%) were observed, linked to specific genes and mutations.
Conclusions:
- Asymptomatic pediatric carriers serve as a significant reservoir for C. difficile, harboring resistant strains.
- Hospital-wide contact likely facilitates transmission among asymptomatic carriers, highlighting potential for dissemination.
- Enhanced surveillance and antimicrobial stewardship are essential in Chinese healthcare settings to control C. difficile and AMR.
Abstract:
A multicenter cross-sectional study was conducted across six Chinese hospitals between September 2023 and April 2024 to investigate the prevalence, molecular epidemiology, antimicrobial resistance (AMR) and genetic relatedness of C. difficile in pediatric populations. Among 1,442 stool samples collected, 242 C. difficile isolates were recovered (16.8%), including 188 from asymptomatic carriers (13.0%) and 11 from confirmed C. difficile infection (CDI) cases (0.98%). The highest rate of asymptomatic carriage was observed in children aged 1-2 years (29.3%). Multilocus sequence typing (MLST) identified ST3 as the predominant sequence type (30.6%), followed by ST42, ST54, ST2, ST102, and ST110. Core genome phylogenetic analysis revealed nine distinct genetic lineages, with lineage VI being the most prevalent among CDI cases. High resistance to clindamycin (64.5%) was observed, primarily mediated by ermB, while all isolates remained susceptible to metronidazole and vancomycin. Moxifloxacin resistance (10.7%) was associated with gyrA T82I mutations, particularly in toxigenic ST3 strains. Transposon analysis indicated ST-specific carriage of AMR genes, with Tn6218(ermB) prevalent in nontoxigenic ST3 isolates and Tn5801 (tet(M)) predominant in ST54. Genomic relatedness (≤2 SNPs) was detected in 12.0% of asymptomatic carriers, with most links associated with hospital-wide contact, suggesting possible transmission events. This study highlights the importance of asymptomatic colonized children as a reservoir for C. difficile, maintaining resistant lineages and disseminating AMR, thereby underscoring the need for enhanced surveillance and targeted antimicrobial stewardship in Chinese healthcare settings.
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