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Biological Performance and Molecular Mechanisms of Mesyl MicroRNA-Targeted Oligonucleotides in Colorectal Cancer
Svetlana K Miroshnichenko1, Olga A Patutina1, Andrey V Markov1
1Institute of Chemical Biology and Fundamental Medicine Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia.
Abstract:
Colorectal cancer (CRC) remains one of the most aggressive and therapeutically resistant malignancies worldwide. This study examined the molecular mechanisms underlying the anti-oncogenic activity of methanesulfonyl phosphoramidate-modified antisense oligonucleotides (µ-ASOs) targeting miR-21, miR-17, and miR-155, which represent critical oncogenic drivers in CRC. Using human colorectal adenocarcinoma Caco-2 cells transfected with either individual µ-ASOs or their triple combination, we assessed target miRNA downregulation, antiproliferative and anti-migratory activities, and performed extensive proteomic profiling. Protein-protein interaction network analysis of differentially expressed proteins (DEPs) revealed that, beyond modulation of core metabolic processes, each µ-ASO exhibited distinct effects: µ-21 predominantly affected apoptosis, cell cycle, and DNA repair; µ-17 influenced proliferation and chaperone responses; and µ-155 modulated intracellular transport and immune regulation. Combination treatment elicited a unique proteomic signature partially overlapping with monotherapies. The proteomic analysis revealed several validated and putative miRNA-targeted DEPs, including both established and novel candidates in the CRC context: RPL31, CCT2, and CDC37 (miR-21); DNM2, SNRPN, NUP98, and NUP85 (miR-17); as well as RPL17 (miR-155). Expression of these targets correlated with favorable clinical outcomes in CRC patients. This work provides the first comprehensive mechanistic insight into antisense oligonucleotide-mediated miRNA suppression in Caco-2 colorectal adenocarcinoma cells and expands the miRNA target landscape.
Insights
Methanesulfonyl phosphoramidate-modified antisense oligonucleotides (µ-ASOs) targeting oncogenic miRNAs show anti-cancer effects in colorectal cancer (CRC) cells. This study reveals distinct molecular mechanisms for individual and combination µ-ASO therapies.
Area of Science:
- Molecular oncology
- Oligonucleotide therapeutics
- Cancer genomics
Background:
- Colorectal cancer (CRC) is a leading cause of cancer mortality, often resistant to therapy.
- Specific microRNAs (miRNAs) like miR-21, miR-17, and miR-155 are key drivers of CRC progression.
- Antisense oligonucleotides (ASOs) offer a targeted approach to modulate miRNA activity.
Purpose of the Study:
- To investigate the molecular mechanisms of methanesulfonyl phosphoramidate-modified antisense oligonucleotides (µ-ASOs) targeting oncogenic miRNAs in CRC.
- To assess the anti-proliferative and anti-migratory effects of individual and combination µ-ASO treatments.
- To identify novel miRNA targets and understand their role in CRC pathogenesis.
Main Methods:
- Utilized human colorectal adenocarcinoma Caco-2 cells.
- Transfected cells with individual or triple combination µ-ASOs targeting miR-21, miR-17, and miR-155.
- Performed miRNA quantification, antiproliferative/anti-migratory assays, and comprehensive proteomic profiling.
- Analyzed protein-protein interaction networks and correlated protein expression with clinical data.
Main Results:
- Each µ-ASO demonstrated distinct effects on cellular processes: µ-21 on apoptosis/cell cycle, µ-17 on proliferation/chaperones, and µ-155 on transport/immune regulation.
- Combination therapy yielded a unique proteomic signature.
- Identified validated and novel miRNA targets (e.g., RPL31, DNM2, RPL17) whose expression correlates with better CRC patient outcomes.
- Established comprehensive mechanistic insights into µ-ASO-mediated miRNA suppression.
Conclusions:
- µ-ASOs targeting oncogenic miRNAs represent a promising therapeutic strategy for CRC.
- Distinct molecular pathways are modulated by individual and combined µ-ASO treatments.
- The identified miRNA targets provide novel biomarkers and therapeutic targets for colorectal cancer.
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