Related Experiment Video
Updated: Jan 9, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
Strategies for automatic generation of information processing pathway maps
Anirudh Lakra1, Cai Wingfield2,3, Chao Zhang4,5,6,7
1Department of Computer Science, University College London, London, United Kingdom.
None:
Information Processing Pathway Maps (IPPMs) are a concise way to represent the evidence for the transformation of information as it travels around the brain. However, their construction currently relies on hand-drawn maps from electrophysical recordings such as magnetoencephalography (MEG) and electroencephalography (EEG). This is both inefficient and contains an element of subjectivity. A better approach would be to automatically generate IPPMs from the data and objectively evaluate their accuracy. In this work, we propose a range of possible strategies and compare them to select the best. To this end, we (a) provide a test dataset against which automatic IPPM creation procedures can be evaluated; (b) suggest two novel evaluation metrics-causality violation and transform recall-from which these proposed procedures can be evaluated; (c) conduct a simulation study to evaluate how well ground-truth IPPMs can be recovered using the automatic procedure; and (d) propose and evaluate a selection of different IPPM creation procedures. Our results suggest that the max pooling approach gives the best results on these metrics. We conclude with a discussion of the limitations of this framework, and possible future directions.
Related Concept Videos
Indirect Motor Pathways
The vestibulospinal tract originates in the vestibular nuclei of the brainstem. The vestibular system detects changes in...
Direct Motor Pathways
The corticospinal tract is responsible for the voluntary movement of the limbs and trunk. It originates in the cerebral cortex of the brain and descends through the cerebrum's internal capsule and...
IP3/DAG Signaling Pathway
MAPK Signaling Cascades

