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Updated: Jun 9, 2026

Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage
Published on: February 7, 2021
Steady-State and Time-Resolved Spectroscopic Study of [Ru(phen)2(dpqa)]2+ Showing Enantiomer-Dependent DNA
Simon N Smith1, Hend Shayoub1, Karen A O'Donoghue2
1School of Chemistry, University College Dublin, Dublin 4 D04 V1W8, Ireland.
None:
Ruthenium polypyridyl complexes are becoming increasingly important as probes for cellular investigations due to their luminescent properties and the possibility of exploiting the interaction with biomolecules due to the differing chirality of their enantiomers. In this study, a DNA light-switch metal complex comprising an intercalating polypyridyl ligand with an amide-linked pentyl chain [Ru(phen)2(dpqa)]2+ (1) (dpqa = 2-pentylamidodipyrido[3,2-f:2',3'-h]-quinoxaline) that undergoes cell internalization is reported. The photophysical properties are dramatically impacted by the amide linker such that 1 is nonluminescent in aqueous media but strongly luminescent when bound to natural DNA. Transient visible absorption and time-resolved infrared measurements show that this is caused by the emissive MLCT excited state being rapidly deactivated in water (11 ps) to another nonemissive excited state with a characteristic infrared spectrum. In the presence of DNA, the delta enantiomer is about 9 times more emissive than the lambda. 1 is internalized by live HeLa cells, and luminescence is observed in hydrophobic pockets. In the presence of the polysorbate 80 nonionic surfactant (Tween 80), which is expected to permeabilize the cell and nuclear membranes, a strong enantiomer-dependent signal was seen from the nucleus.

