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Single-Cell and Spatial Multiomics: Applications for Diseases.
Wentao Li1,2, Chao Chen1, Xin Zhu1,3
1Key Laboratory of Head & Neck Cancer Translation Research of Zhejiang Province Zhejiang Cancer Hospital Hangzhou China.
Medcomm
|December 17, 2025
Summary
Single-cell and spatial multiomics offer novel ways to understand human disease mechanisms. Integrating these approaches aids in disease diagnosis, treatment planning, and advancing precision medicine.
Area of Science:
- Biomedical research
- Genomics
- Molecular biology
Background:
- Human diseases involve complex molecular networks.
- Single-cell and spatial multiomics provide new tools for disease research.
- Integrating these multiomics approaches enhances understanding of cellular characteristics and connections in disease.
Purpose of the Study:
- To review single-cell and spatial multiomics approaches.
- To discuss their application in understanding disease mechanisms (e.g., cancer, neurodegenerative diseases, aging).
- To explore the role of deep learning in analyzing multiomics data for disease insights.
Main Methods:
- Review of single-cell and spatial multiomics techniques.
- Analysis of deep learning applications in multiomics data.
- Case studies on cancer, neurodegenerative diseases, and aging.
Main Results:
- Single-cell and spatial multiomics integration offers deeper insights into disease pathogenesis.
- Deep learning enhances the analysis of upstream pathogenic alterations and downstream molecular effects.
- These approaches are crucial for guiding treatment strategies and risk assessment in precision medicine.
Conclusions:
- Single-cell and spatial multiomics are powerful tools for elucidating disease pathogenesis.
- The integration of these technologies promises significant advancements in understanding and treating human diseases.
- The field is rapidly evolving, with deep learning playing a key role in data analysis.

