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A Novel Approach to GNN Explainability: Distilling Knowledge With Inter-Layer Alignment
IEEE Transactions on Pattern Analysis and Machine Intelligence
|December 17, 2025
Summary
We developed a simpler proxy model to explain complex Graph Neural Networks (GNNs). This method uses knowledge distillation with inter-layer alignment, making GNN explanations more transparent and efficient.
Area of Science:
- Artificial Intelligence
- Machine Learning
- Network Science
Background:
- Graph Neural Networks (GNNs) excel at network data analysis but suffer from a "black-box" problem, hindering trust and application.
- Existing GNN explanation methods are often complex and costly due to reliance on subgraph selection and combinatorial optimization.
- Over-smoothing in GNNs further complicates model interpretability and explanation generation.
Purpose of the Study:
- To develop a lower-complexity proxy model for explaining GNN decision-making processes.
- To enhance the transparency and trustworthiness of GNN models in complex network analysis.
- To address the challenges of high explanation costs and the impact of over-smoothing on GNN interpretability.
Main Methods:
- Introduced a proxy model derived from complex GNNs using knowledge distillation.
- Employed inter-layer alignment during distillation to ensure proxy model fidelity to the original GNN.
- Theoretically proved the faithfulness of explanations generated by the proxy model to both models.
Main Results:
- The proposed method effectively distills insights from complex GNNs into a manageable proxy model.
- Inter-layer alignment successfully mitigates over-smoothing effects, improving explanation quality.
- Experimental results on real-world datasets demonstrate the effectiveness and robustness of the proposed explanation technique.
Conclusions:
- The developed proxy model offers a more transparent and efficient approach to explaining GNNs.
- Knowledge distillation with inter-layer alignment is a viable strategy for enhancing GNN interpretability.
- The method provides faithful and robust explanations, paving the way for broader GNN adoption.
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