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Updated: Jan 8, 2026

Imaging Metals in Brain Tissue by Laser Ablation - Inductively Coupled Plasma - Mass Spectrometry LA-ICP-MS
Published on: January 22, 2017
Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging
Barbara Umfahrer1, Jakub Buday2, Pavel Pořízka2
1Laboratory of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, Zurich 8093, Switzerland.
This study introduces a new method using Uniform Manifold Approximation and Projection (UMAP) and k-means clustering to improve quantitative accuracy in Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS) elemental imaging of geological samples.
Area of Science:
- Geochemistry
- Analytical Chemistry
- Materials Science
Background:
- Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS) provides high-resolution elemental imaging but faces quantification challenges in heterogeneous materials.
- Global normalization methods often fail in complex matrices, leading to significant errors in elemental quantification.
- Accurate elemental quantification is crucial for understanding geological processes and material compositions.
Purpose of the Study:
- To develop a novel workflow for accurate, phase-specific elemental quantification in LA-ICP-MS imaging.
- To address the limitations of traditional normalization strategies in complex geological samples.
- To enhance the interpretability and reliability of multielemental imaging data.
Main Methods:
- Utilized Uniform Manifold Approximation and Projection (UMAP) for unsupervised dimensionality reduction of elemental maps.
- Employed k-means clustering to segment mineralogical phases based on elemental concentrations.
- Implemented pixel-wise, phase-specific normalization by matching cluster compositions to known minerals.
Main Results:
- Successfully segmented mineralogical phases in dawsonite-bearing sandstones, enabling phase-specific quantification.
- Significantly reduced quantification errors, correcting over/underestimations by up to 60%.
- Enabled consistent, phase-resolved geochemical comparisons across depth profiles.
Conclusions:
- The UMAP and k-means clustering workflow provides a robust solution for accurate elemental quantification in LA-ICP-MS.
- This method overcomes limitations of global normalization in heterogeneous geological materials.
- UMAP is established as a practical tool for improving quantitative accuracy and interpretability in multielemental imaging.
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