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Protein Folding01:22

Protein Folding

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Related Experiment Video

Updated: May 7, 2026

How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index
09:57

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A subject-specific reversible folding model reveals geometry-driven white-matter organization.

Besm Osman1, Ruben Vink1, Andrei C Jalba1

  • 1Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, The Netherlands.

Biorxiv : the Preprint Server for Biology
|December 19, 2025
PubMed
Summary

This study introduces a novel brain folding simulation to reconstruct white matter tracts using only T1-weighted MRI scans. This geometry-driven approach accurately maps fiber orientation without diffusion data or machine learning.

Keywords:
Computational ModelingCortical Folding SimulationFetal BrainTractography

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Area of Science:

  • Neuroimaging
  • Computational Neuroscience
  • Developmental Neuroscience

Background:

  • Current tractography methods using diffusion data and seed maps lack anatomical accuracy.
  • White matter fiber development is closely linked to cortical folding patterns during brain development.

Purpose of the Study:

  • To develop a subject-specific cortical folding simulation framework to reconstruct white matter fiber organization.
  • To investigate the mechanistic link between cortical geometry and fiber organization using a novel computational model.

Main Methods:

  • Introduced a quasi-static, constraint-based model to simulate cortical folding trajectories from structural T1-weighted MRI.
  • Reversed folding to a fetal-like configuration and then refolded to map volumetric deformation onto fiber organization.
  • Validated the model with longitudinal fetal MRI and applied it to adult data.

Main Results:

  • Simulated cortical folds demonstrated biologically plausible developmental paths.
  • The model accurately reproduced diffusion-derived white matter orientation patterns and regional correspondence in adults.
  • Generated realistic short-range U-fibers and long-range association/commissural pathways without diffusion input or machine learning.

Conclusions:

  • Cortical geometry alone provides a powerful, anatomically grounded source for subject-specific white matter fiber orientation.
  • This geometry-informed approach offers a new paradigm for tractography, reducing reliance on diffusion imaging.
  • The framework opens new avenues for understanding brain development and improving tractography accuracy.