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Texture-Based Preprocessing Framework with nnU-Net Model for Accurate Intracranial Artery Segmentation.
1Institute of Human Convergence Health Science, Gachon University, 191, Hambakmoero, Yeonsu-gu, Incheon 21936, Republic of Korea.
Journal of Imaging
|December 24, 2025
Summary
A novel texture-based preprocessing method significantly enhances intracranial artery segmentation from digital subtraction angiography (DSA) using the nnU-Net model. This approach improves accuracy and topological details for better neurovascular diagnosis.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Neuroscience
Background:
- Accurate segmentation of intracranial arteries from DSA is crucial for diagnosing neurovascular conditions and planning treatments.
- Current deep learning models show promise but are limited by preprocessing techniques.
- Enhancing preprocessing is key to improving the accuracy of vascular extraction.
Purpose of the Study:
- To develop and evaluate a texture-based contrast enhancement preprocessing framework integrated with nnU-Net for improved intracranial artery segmentation.
- To assess the impact of the proposed method on segmentation accuracy and topological representation in DSA images.
Main Methods:
- A texture-based contrast enhancement framework was developed, fusing local contrast, entropy, and brightness threshold maps into a combined feature mask.
- This feature mask was used as input for the nnU-Net deep learning model for segmentation.
- Performance was evaluated on the DIAS dataset using metrics like Dice Similarity Coefficient (DICE) and Intersection over Union (IoU).
Main Results:
- The proposed method achieved a DICE of 0.83 ± 0.20 and IoU of 0.72 ± 0.14, outperforming CLAHE and baseline methods.
- Significant improvements in vessel connectivity (VC) and topological accuracy were observed, with VC dropping by over 65% relative to unprocessed images.
- The texture-based preprocessing demonstrated robustness and noise tolerance compared to existing methods.
Conclusions:
- Integrating texture-based preprocessing with nnU-Net substantially enhances intracranial artery segmentation from DSA.
- The method provides robust, noise-tolerant, and clinically interpretable results, advancing neurovascular diagnostic capabilities.
- This approach offers a significant improvement over traditional methods for vascular segmentation in medical imaging.

