Lexicon for Clonal Hematopoiesis in Liquid Biopsy
Robert Tell1, Ahmet Zehir2, Andrew T Anfora3
1Tempus AI, Inc., Chicago, Illinois, USA.
Insights
Clonal hematopoiesis (CH) complicates cell-free DNA (cfDNA) testing but offers diagnostic potential. The BLOODPAC Consortium created a lexicon to standardize terms for CH/CHIP, improving liquid biopsy interpretation and data collection.
Area of Science:
- Genomics
- Biomarkers
- Oncology
Background:
- Clonal hematopoiesis (CH) historically confounded cell-free DNA (cfDNA) testing.
- Emerging evidence highlights CH as a health risk factor and a source for liquid biopsy diagnostics.
- Standardization gaps hinder the clinical translation of CH-based liquid biopsy assays.
Purpose of the Study:
- To address the need for accurate identification and removal of CH from liquid biopsy results.
- To develop a standardized lexicon for CH/CHIP and liquid biopsy terminology.
- To facilitate communication and unify data collection across stakeholders in the field.
Main Methods:
- Establishment of the CH/clonal hematopoiesis of indeterminate potential (CHIP) Working Group by the BLOODPAC Consortium.
- Development of a unified vocabulary for CH, CHIP, liquid biopsy, DNA sequencing, biomarkers, and clinical applications.
- Focus on standardizing terms to improve interpretability of CH/CHIP results.
Main Results:
- A lexicon has been developed to standardize terminology related to CH/CHIP.
- The lexicon aims to unify vocabulary for liquid biopsy, DNA sequencing, biomarkers, and clinical use cases.
- This initiative supports the accurate identification and interpretation of CH/CHIP in liquid biopsies.
Conclusions:
- Standardized terminology is crucial for advancing CH/CHIP diagnostics in liquid biopsies.
- Agreement on terminology will improve communication among researchers, clinicians, and regulatory bodies.
- The developed lexicon facilitates consistent data collection and enhances the clinical utility of liquid biopsy assays.
Abstract:
Historically, clonal hematopoiesis (CH) has been recognized as a confounder of cell-free DNA (cfDNA) testing. Recent evidence now demonstrates the role of CH as a risk factor in health, generating distinct sources of cfDNA that can be leveraged for liquid biopsy diagnostics. Nonetheless, gaps in standardization challenge the advancement of such diagnostics from development to regulatory approval, through clinical trials, and ultimately, to routine implementation. In 2024, the Blood Profiling Atlas in Cancer (BLOODPAC) Consortium, a collaborative infrastructure for developing standards and best practices for liquid biopsy assays, established the CH/clonal hematopoiesis of indeterminate potential (CHIP) Working Group to address the need for accurate identification and removal of CH from liquid biopsy results. As a first step to support the interpretability of CH/CHIP results, the Working Group developed this lexicon to standardize terms and provide a unified vocabulary related to CH and liquid biopsy, DNA sequencing tests, biomarkers, and clinical use cases, facilitating communication within the field. BLOODPAC's CH/CHIP Working Group believes that terminology agreement across these various stakeholders can improve communication in the field and unify future data collection efforts across studies.
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