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Watershed Planning within a Quantitative Scenario Analysis Framework
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A graph-based machine learning framework for river water quality management under data limitations.

Sueryun Choi1, Zahid Ullah2, Moon Son2

  • 1Gyeonggi-do Institute of Health and Environment Research, Cheongsa-ro 1beon-gil, Uijeongbu-si, Gyeonggi-do, 11780, Republic of Korea.

Journal of Environmental Management
|January 11, 2026
PubMed
Summary
This summary is machine-generated.

Accurate riverine water quality prediction is improved using a machine learning framework that integrates graph neural networks and explainable AI. This approach effectively identifies pollution sources and guides management strategies in data-limited environments.

Keywords:
Counterfactual analysisExplainable artificial intelligence (XAI)Graph neural network (GNN)River basin managementSparse sampling dataWater quality prediction

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Area of Science:

  • Environmental Science
  • Water Resource Management
  • Machine Learning Applications

Background:

  • Accurate riverine water quality prediction is challenged by sparse data and limited streamflow information, common in resource-constrained watershed monitoring.
  • Existing methods often struggle to integrate diverse hydro-environmental variables effectively for robust forecasting.

Purpose of the Study:

  • To develop and validate a novel three-module machine learning framework for riverine water quality prediction, interpretation, and management.
  • To apply this framework to chromaticity prediction in the Hantan River Basin, addressing data limitations.

Main Methods:

  • A three-module framework combining graph neural networks (GNNs) or recurrent networks for prediction, explainable AI for interpretation, and counterfactual analysis for management.
  • Utilized a dataset of 1667 monthly observations from 59 sites covering 37 hydro-environmental variables.
  • Employed independent training, validation, and testing sets for rigorous performance assessment.

Main Results:

  • Graph-based models, particularly the enhanced Graph Sample-and-Aggregate, outperformed recurrent baselines, achieving a test R² of 0.82.
  • Interpretability analyses identified the SC sub-watershed as a primary intervention region and distinguished long-term from short-term pollution drivers.
  • Counterfactual analysis demonstrated feasible downstream chromaticity targets (14-15 CU) with success rates of 26-40%.

Conclusions:

  • The proposed machine learning framework significantly enhances riverine water quality prediction accuracy and interpretability.
  • It provides a cost-effective, decision-support tool for watershed management, especially under data-limited conditions.
  • The study highlights the effectiveness of GNNs in capturing pollution source characteristics and transport pathways.