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Updated: Jan 13, 2026

Sample Preparation by 3D-Correlative Focused Ion Beam Milling for High-Resolution Cryo-Electron Tomography
Published on: October 25, 2021
Reproducible Sample Preparation of Virus-Infected Cells for Cryo-FIB/ET Using Manual Plunge Freezing.
Nathalie R Lavoie1,2, Ekaterina E Heldwein1,2
1Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
This study presents a beginner-friendly protocol for preparing herpes simplex virus 1-infected mammalian cells for cryo-electron tomography (cryo-ET). The method uses basic equipment to optimize sample preparation for visualizing virus-induced cellular changes.
Area of Science:
- Virology
- Cell Biology
- Microscopy
Background:
- Viruses extensively remodel host cells for infection.
- Electron microscopy (EM) techniques like cryo-focused ion beam (cryo-FIB) milling and cryo-electron tomography (cryo-ET) have advanced virus visualization.
- There is a need for accessible protocols for preparing virus-infected cells for cryo-FIB/ET.
Purpose of the Study:
- To provide an in-house, beginner-friendly protocol for preparing herpes simplex virus 1 (HSV-1)-infected mammalian cells for cryo-FIB/ET.
- To guide new users through sample preparation using basic, manual equipment.
- To optimize cell seeding, blotting, and plunge-freezing for efficient data collection.
Main Methods:
- Developed a protocol for seeding HSV-1 infected cells onto EM grids.
- Detailed manual blotting and plunge-freezing techniques.
- Included tips for screening and prioritizing grids for milling and data acquisition.
Main Results:
- The protocol yields grids with thin ice and evenly distributed cells.
- Successfully prepared samples suitable for focused ion beam milling.
- The method is designed for users without access to advanced cryo-EM facilities.
Conclusions:
- This protocol enables new users to prepare virus-infected cells for cryo-FIB/ET using basic equipment.
- Optimized sample preparation is crucial for successful visualization of virus-induced cellular remodeling.
- The developed method facilitates the study of viral infections at a high resolution.
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