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Updated: Jan 17, 2026

Improvement of Bacillus subtilis Spore Enumeration and Label Analysis in Flow Cytometry
Published on: June 30, 2023
Flow cytometric distinction of mature spores of Bacillus subtilis 168 using Auramine O
Yuka Harada1, Ritsuko Kuwana2, Shoko Yagi1
1Research Division, TOA Biopharma Co., Ltd., Tatebayashi, Gunma, Japan.
Abstract:
We developed a simple and effective method for distinguishing mature spores (MSs) of Bacillus subtilis 168 from mixed cell population using Auramine O (AuO) staining combined with flow cytometry (FCM) analysis. AuO preferentially stains MSs, enabling fluorescence-based discrimination. To optimize the method, B. subtilis 168 was stained with AuO and heated at different temperatures (25, 40, 55, or 70 °C) before FCM analysis. Among the tested conditions, heating for 30 min at 55 °C yielded the most distinct separation between MSs and other cell types based on fluorescence intensity. This approach combines the high-throughput capability of FCM with temperature-enhanced fluorescent staining to achieve efficient and accurate spore identification. This method is simple, rapid, and scalable, with potential applications in food safety testing and probiotic product manufacturing, where fast and reliable bacterial enumeration is essential.
Insights
A new method uses Auramine O (AuO) staining and flow cytometry (FCM) to easily identify Bacillus subtilis spores. Heating spores at 55°C enhances fluorescent staining for accurate bacterial enumeration.
Area of Science:
- Microbiology
- Analytical Chemistry
- Biotechnology
Background:
- Accurate enumeration of bacterial spores is crucial for food safety and probiotic manufacturing.
- Distinguishing mature spores from vegetative cells in Bacillus subtilis populations can be challenging.
Purpose of the Study:
- To develop a simple, rapid, and effective method for distinguishing mature Bacillus subtilis 168 spores from mixed cell populations.
- To optimize spore staining and identification using Auramine O (AuO) and flow cytometry (FCM).
Main Methods:
- Utilized Auramine O (AuO) fluorescent staining for Bacillus subtilis 168.
- Employed flow cytometry (FCM) analysis to measure fluorescence intensity.
- Optimized staining by testing heat treatment at various temperatures (25, 40, 55, 70 °C) for 30 minutes.
Main Results:
- Auramine O (AuO) preferentially stains mature spores, enabling fluorescence-based discrimination.
- Heating at 55 °C for 30 minutes provided the most distinct separation between spores and other cell types.
- The optimized method demonstrated efficient and accurate spore identification via FCM.
Conclusions:
- The combined AuO staining and heat treatment with FCM offers a high-throughput, scalable method for spore identification.
- This technique is valuable for applications requiring fast and reliable bacterial enumeration, such as in food safety and probiotic production.
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