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Updated: Jan 18, 2026

Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples
Published on: October 25, 2018
Harnessing a high-quality Salmonella genome catalog to combat antimicrobial resistance and inform outbreak responses
Beiwen Zheng1,2,3, Yi Liu1, Yonghong Xiao1,2,3
1State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China.
Abstract:
•A century-scale analysis of 208,000 + Salmonella genomes reveals accelerating global antimicrobial resistance (AMR).•Multidrug-resistant Salmonella outbreaks are rising worldwide, endangering food safety and public health systems.•Fluoroquinolone- and cephalosporin-resistant Salmonella are WHO-prioritized threats, demanding genomic surveillance.•CLSGDBv2 enables open-access, One Health monitoring of Salmonella AMR evolution and dissemination.•Environmental, social, and climatic drivers shape Salmonella AMR emergence, informing targeted interventions.
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