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Using an Unbiased Coexpression Network to Reveal Cross-Talking Pathways of Phosphoinositide-3-Kinase Regulatory
Zhike Zhou1, Sha Sha1, Xiangnan Zhou2
1Department of Geriatrics, The First Hospital of China Medical University, Shenyang, China.
Abstract:
Skin aging is a highly complex process embracing chronological aging and photoaging. Continuous advancement in the study of skin aging facilitates the innovations of skin rejuvenation therapies. However, the mechanism underlying skin aging remains largely unexplored. Herein, differential expression gene (DEG) analysis identified a gradual down-regulation of PIK3R1 in aged untreated skin, aged treated skin (treated with intense pulsed light), and young skin. Among 11 964 background genes, thousands of DEGs were identified in all aged/young and PIK3R1-low/high groups. Coexpression modules were created using weight gene correlation network analysis, showing an enrichment in PI3K/AKT, Rap1, regulating pluripotency of stem cells (rPSC), etc. Furthermore, DEGs with strong relation to skin vitality and PIK3R1 were extracted for network analysis, wherein cross-talking pathways of PIK3R1 including PI3K/AKT, Rap1, and rPSC were identified. The same cross-talking pathways were also replicated in aged untreated and treated skin, as implemented by enrichment analyses of DEGs in aged untreated versus young or aged treated skin. According to the area under the curve of 100% and 88%, PIK3R1 possibly predicted skin aging and skin rejuvenation, respectively. RT-PCR and western blot confirmed the decline of PIK3R1 expression in aged treated and young skin, compared with aged untreated skin. PIK3R1 knockdown led to increased p-AKT (Ser473) and Bcl-2, and decreased p-FOXO1 (Ser256) and MMP-1, which may be the cause of more resistance to ultraviolet A induced cell senescence, proliferation inhibition, apoptosis, and collagen synthesis decline in PIK3R1 knockdown HDFs. Our study preliminarily elucidates the comprehensive role of PIK3R1 in skin aging, providing a potential new target for skin rejuvenation.
Insights
The study found that PIK3R1 (Phosphoinositide 3-kinase regulatory subunit 1) expression decreases with skin aging and after rejuvenation treatments. Lower PIK3R1 levels may protect skin cells from damage, suggesting it as a target for skin rejuvenation therapies.
Area of Science:
- Dermatology
- Molecular Biology
- Genetics
Background:
- Skin aging is a complex process involving chronological aging and photoaging, with underlying mechanisms still under investigation.
- Advancements in understanding skin aging drive innovation in rejuvenation therapies, yet key molecular pathways remain underexplored.
Purpose of the Study:
- To investigate the role of PIK3R1 (Phosphoinositide 3-kinase regulatory subunit 1) in skin aging and rejuvenation.
- To identify molecular pathways associated with PIK3R1 expression and their impact on skin cell behavior.
Main Methods:
- Differential gene expression (DEG) analysis and weighted gene correlation network analysis (WGCNA) were employed.
- Network analysis and pathway enrichment analyses were performed on DEGs related to skin vitality and PIK3R1.
- RT-PCR and Western blot were used to validate PIK3R1 expression changes. PIK3R1 knockdown experiments were conducted in human dermal fibroblasts (HDFs).
Main Results:
- PIK3R1 expression was found to decrease gradually in aged skin (both untreated and treated) and young skin compared to aged untreated skin.
- Coexpression network analysis revealed PIK3R1's association with PI3K/AKT, Rap1, and regulating pluripotency of stem cells (rPSC) pathways.
- PIK3R1 knockdown in HDFs enhanced resistance to UVA-induced senescence, apoptosis, and collagen decline, potentially via modulation of AKT, Bcl-2, FOXO1, and MMP-1.
Conclusions:
- PIK3R1 plays a significant role in skin aging and may serve as a predictive marker for skin aging and rejuvenation.
- The findings suggest PIK3R1's involvement in key cellular pathways regulating skin vitality and response to aging and rejuvenation stimuli.
- PIK3R1 presents a potential novel therapeutic target for developing effective skin rejuvenation strategies.
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