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Updated: Jan 22, 2026

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Outer-Boundary Assisted Segmentation and Quantification of Trabecular Bones by an Imagej Plugin
Published on: March 14, 2018
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Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal
Rafael Arnay1, Pedro García-Villa2, Javier Hernández-Aceituno1
1Department of Computer Engineering and Systems, University of La Laguna, La Laguna, Santa Cruz de Tenerife, Spain.
Plos One
|January 20, 2026
Summary
A new deep learning tool automates the identification of bone, charcoal, and lithic materials in archaeological micromorphology. This AI enhances accuracy and reproducibility in geoarchaeological research.
Area of Science:
- Archaeological Science
- Geoarchaeology
- Digital Archaeology
Background:
- Archaeological micromorphology analysis is often subjective and challenging.
- Accurate quantification of materials like bone, charcoal, and lithics is crucial for understanding past environments and human activities.
Purpose of the Study:
- To develop and evaluate a deep learning tool for the automatic segmentation and quantification of key materials in archaeological thin sections.
- To improve objectivity, accuracy, and reproducibility in the analysis of archaeological micromorphology.
Main Methods:
- Utilized high-resolution photomicrographs of 57 thin sections.
- Trained and evaluated state-of-the-art convolutional neural networks (CNNs), specifically a U-Net with an InceptionV4 encoder.
- Applied the models to segment and classify the relative abundance of flint/obsidian, bone, and charcoal.
Main Results:
- The U-Net with InceptionV4 encoder achieved high mean intersection over union (IoU) scores: 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal.
- Balanced accuracies for material abundance classification were excellent: 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal.
- Demonstrated the effectiveness of deep learning in material segmentation and quantification.
Conclusions:
- Deep learning offers a powerful solution to enhance objectivity and accuracy in archaeological micromorphology.
- The developed tool provides a valuable resource for geoarchaeological research, enabling more reliable analysis of Palaeolithic contexts.
- Automated segmentation and quantification can significantly improve reproducibility in the field.
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