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Updated: Jan 22, 2026

Simultaneous DNA-RNA Extraction from Coastal Sediments and Quantification of 16S rRNA Genes and Transcripts by Real-time PCR
Published on: June 11, 2016
Draft genome sequence data on Streptomyces salinarius MPA0124 isolated from coastal sediments of Pondicherry, India
Munisamy Prathaban1, Murugesan Sobanaa1, S Hari Krishna Kumar2
1Carbon Capture and Utilization Laboratory, Department of Microbiology, Pondicherry University, Pondicherry 605014, India.
Abstract:
Streptomyces salinarius MPA0124, a halotolerant actinobacterium, was isolated from coastal sediments of Pondicherry, India, using Bennett's agar supplemented with 5 % NaCl. The draft genome, sequenced using the Illumina HiSeq platform, comprises 8.01 Mb across 122 contigs with a GC content of 72.22 %. Genome annotation predicted 7548 coding sequences, 70 tRNAs, and 4 rRNAs, indicating a metabolically diverse genetic repertoire. Functional analysis revealed a broad array of carbohydrate-active enzymes (CAZymes) involved in cellulose, hemicellulose, pectin, and lignin degradation, highlighting the strain's role in polysaccharide turnover and carbon recycling in saline ecosystems. Phylogenomic analysis clustered S. salinarius MPA0124 closely with S. salinarius SS06011 and S. ardesiacus NBRC15402, confirming its taxonomic placement within the Streptomyces genus. The genomic dataset enriches the current knowledge of marine-derived Streptomyces and underscores its potential for biotechnological applications in biomass conversion, enzyme discovery, and biosaline agriculture. The genome sequence has been deposited in NCBI under the accession number NZ_JBJDRC000000000.1.
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