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Updated: Jan 28, 2026

Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
Published on: June 24, 2021
Unraveling the FGFR-RNA splicing axis: Mechanisms, oncogenic crosstalks and innovations for therapeutic purpose
Xuquan Xian1,2, Ruyi Gong2, Shunzi Rong2
1National Health Commission (NHC) Key Laboratory of Nuclear Technology Medical Transformation, Sichuan Provincial Engineering Research Center of Nuclear Medical Equipment Translation and Application, Sichuan Clinical Research Center for Radiation and Therapy, Mianyang Central Hospital, Mianyang 621000, China.
Abstract:
Fibroblast growth factor receptor (FGFR) signaling is a pivotal regulator of tumor progression, driving cell proliferation, survival, metastasis, and therapeutic resistance across diverse cancer types. RNA alternative splicing profoundly shapes FGFR isoform diversity, endowing tumors with heterogeneity and adaptability to targeted interventions. While significant progress has been made in identifying splicing regulators that govern FGFR pre-mRNA processing, the extracellular cues influencing this process and the reciprocal impact of FGFR signaling pathway on global splicing networks remain underexplored. This review provides a comprehensive overview of the bidirectional interplay linking FGFR signaling and RNA splicing in cancer. Mechanistically, we first detail how FGFR mutations, epigenetic modifications, and crosstalks with oncogenic pathways reprogram splicing to generate tumor-specific FGFR splice variants. We then systematically classify distinct FGFR isoforms and delineate how they contribute to main cancer hallmarks, underscoring the central role of the FGFR-splicing axis in driving tumor plasticity, heterogeneity and adaptive progression. Conversely, we also examine how FGFR signaling modulates RNA splicing programs beyond FGFR itself, reshaping global splicing events that contribute to tumorigenesis, an emerging and still largely unexplored area of cancer biology. From therapeutic perspective, we highlight emerging strategies targeting the axis. Notably, FGFR splicing isoform-directed radiopharmaceuticals hold great promise for patient stratification and biomarker-directed theranostics, providing a precise approach to identify aggressive tumors and guide tailored interventions. As well, complementary approaches, including CRISPR/Cas9-based splicing modulation and long non-coding RNAs-targeted therapies, further expand the toolbox for isoform-specific intervention. Moreover, integrating splicing modulators with FGFR TKIs may overcome drug resistance. Understanding the intricate interplay between FGFR signaling and RNA splicing will not only advance biomarker-guided therapeutic development but also provide a novel framework to counteract tumor adaptability, ultimately improving outcomes in FGFR-driven malignancies.
Insights
Fibroblast growth factor receptor (FGFR) signaling and RNA splicing are intricately linked in cancer. Understanding this interplay reveals new therapeutic strategies for FGFR-driven tumors.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Fibroblast growth factor receptor (FGFR) signaling drives tumor progression, including proliferation, survival, metastasis, and drug resistance.
- RNA alternative splicing generates FGFR isoform diversity, contributing to tumor heterogeneity and adaptability.
- The influence of extracellular cues on FGFR splicing and the impact of FGFR signaling on global splicing networks are underexplored.
Purpose of the Study:
- To provide a comprehensive overview of the bidirectional interplay between FGFR signaling and RNA splicing in cancer.
- To explore how FGFR mutations, epigenetic changes, and oncogenic pathway crosstalk reprogram splicing to create tumor-specific FGFR splice variants.
- To examine how FGFR signaling influences broader RNA splicing programs in tumorigenesis.
Main Methods:
- Review of existing literature on FGFR signaling, RNA splicing, and cancer biology.
- Analysis of mechanisms by which FGFR alterations impact splicing patterns.
- Classification of FGFR isoforms and their roles in cancer hallmarks.
- Examination of FGFR signaling's effect on global splicing networks.
- Discussion of therapeutic strategies targeting the FGFR-splicing axis.
Main Results:
- FGFR mutations, epigenetic modifications, and oncogenic pathway crosstalk lead to tumor-specific FGFR splice variants.
- Distinct FGFR isoforms contribute to key cancer hallmarks, driving tumor plasticity and adaptive progression.
- FGFR signaling modulates global RNA splicing, impacting tumorigenesis in largely unexplored ways.
- FGFR splicing isoform-directed radiopharmaceuticals offer potential for patient stratification and theranostics.
- CRISPR/Cas9, lncRNA-targeted therapies, and combination approaches with FGFR TKIs show promise for intervention.
Conclusions:
- The FGFR-splicing axis is central to tumor adaptability and progression in FGFR-driven malignancies.
- Targeting this axis, through novel radiopharmaceuticals or splicing modulators, can improve therapeutic outcomes.
- Understanding the reciprocal relationship between FGFR signaling and splicing provides a framework to overcome tumor adaptability and resistance.
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