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Updated: Jan 30, 2026

Mouse Kidney Transplantation: Models of Allograft Rejection
Published on: October 11, 2014
Injured epithelial cell states impact kidney allograft survival after T-cell-mediated rejection
Anna Maria Pfefferkorn1, Lorenz Jahn2, Patrick T Gauthier3
1Department of Surgery, Experimental Surgery, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Berlin, Germany.
Abstract:
T-cell-mediated rejection (TCMR) remains a major cause of kidney transplant failure, despite being considered treatable. Its impact reflects a limited understanding of the underlying molecular mechanisms and their clinical consequences. To address this, we induced acute TCMR in mouse kidney transplants and profiled molecular changes using single-nucleus RNA sequencing (snRNA-seq), spatial transcriptomics and immunofluorescence. Results were compared with human snRNA-seq data from TCMR and stable allografts, as well as single-cell deconvolution analysis of bulk transcriptomic data from kidney transplant biopsies. Here we show that TCMR induces injured epithelial cell states in mouse kidney allografts, particularly in proximal tubules and thick ascending limbs. Spatial transcriptomics of these injured epithelial states demonstrated heterogeneous localization, interactions with immune cells and cellular microenvironments. Cross-species analysis confirmed similar severely injured epithelial states in human samples, whose abundances correlated with transplant survival and persisted despite TCMR resolution. Collectively, our results identify epithelial injury cell states as a determinant of outcome after TCMR.
Insights
Kidney transplant failure due to T-cell-mediated rejection (TCMR) is linked to specific injured epithelial cell states. These cell states in proximal tubules and thick ascending limbs impact transplant survival, even after rejection resolves.
Area of Science:
- Nephrology
- Immunology
- Translational Medicine
Background:
- T-cell-mediated rejection (TCMR) is a primary cause of kidney transplant failure.
- Limited understanding of TCMR molecular mechanisms hinders effective treatment and outcomes.
- Identifying molecular drivers of TCMR is crucial for improving graft survival.
Purpose of the Study:
- To investigate the molecular and cellular changes associated with T-cell-mediated rejection in kidney allografts.
- To identify specific cell states and their role in transplant outcomes.
- To compare findings between mouse models and human kidney transplant biopsies.
Main Methods:
- Induction of acute TCMR in mouse kidney allografts.
- Single-nucleus RNA sequencing (snRNA-seq) and spatial transcriptomics.
- Immunofluorescence, cross-species analysis with human data, and deconvolution of bulk transcriptomics.
Main Results:
- TCMR induces distinct injured epithelial cell states in mouse kidney allografts, notably in proximal tubules and thick ascending limbs.
- Spatial transcriptomics revealed heterogeneous localization and immune cell interactions within these injured epithelial states.
- Similar injured epithelial cell states were identified in human TCMR allografts, correlating with transplant survival and persisting post-rejection.
Conclusions:
- Epithelial injury cell states are a significant determinant of outcomes following T-cell-mediated rejection.
- These findings highlight the critical role of epithelial health in kidney transplant success.
- Targeting these specific epithelial cell states may offer novel therapeutic strategies for preventing transplant failure.
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