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New Insights into Probiotic Enumeration in a Complex Food Matrix: Flow Cytometry and Plate Count Correlation
Gonzalo Saiz-Gonzalo1, Orlaith O'Connell1, Shima Joy1
1AnaBio Technologies, Carrigtwohill, Cork, T45RW24, Ireland.
Journal of AOAC International
|January 31, 2026
Summary
Flow cytometry offers same-day probiotic counts, enumerating all viable cells for accurate product labeling. This method complements traditional plate counts, ensuring precise quantification in food products.
Area of Science:
- Microbiology
- Analytical Chemistry
- Food Science
Background:
- Accurate probiotic enumeration is crucial for determining the delivered dose to the host.
- Plate counting (PC) only detects culturable cells and may underestimate viable cells, especially if injured or dormant.
Purpose of the Study:
- To validate a flow cytometry assay for quantifying active fluorescent units (AFU) of probiotics.
- To compare AFU counts with traditional plate counts (PC) for micro-encapsulated Lacticaseibacillus rhamnosus GG in a snack product.
Main Methods:
- Evaluation of plate count and flow cytometry methods based on AOAC/ICH/USP principles.
- Assessment of precision, accuracy, ruggedness, specificity, and robustness in a commercial snack product.
Main Results:
- Both methods met performance targets (%RSD ≤ 15; AFU recovery 100-104%; live/dead R2 ≥ 0.95).
- Flow cytometry provided same-day results with high spike recovery (100-104%) and linear live/dead tracking (R2 ≥ 0.95).
- AFU and colony-forming unit (CFU) counts were equivalent within ±0.5 log, with minimal batch mean differences (≤0.2 log) and no systematic bias.
Conclusions:
- The validated flow cytometry method provides rapid, same-day enumeration of membrane-intact probiotic cells.
- This method complements PC by quantifying all viable cells, aiding label accuracy and dose estimation in food products.
- Findings support using AFU alongside CFU for comprehensive probiotic quantification in snack matrices.
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