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Published on: January 22, 2019
AI-assisted identification of a novel Orthopoxvirus inhibitor targeting F13
Junwen Luan1,2, Annan Ming2, Wenbo Zhao2
1Department of Clinical Laboratory Medicine, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan 250014, China.
Abstract:
Treatment of mpox virus (MPXV) is crucial for public health. However, research into drugs for MPXV has fallen behind, particularly in anticipation of sudden outbreaks. This study aimed to identify new inhibitors of Orthopoxvirus using artificial intelligence (AI)-assisted methods. We explored AlphaFold v2.0 to simulate the F13 protein structures of MPXV, vaccinia virus (VACV), and variola virus (VARV). Utilizing MOE2019 software, we identified amino acid binding sites suitable for small molecule docking, focusing on a phosphodiesterase active site pocket in F13. Our efforts led to the identification of JCS-2022, a promising new inhibitor that exhibited docking similarities with the known anti-poxvirus drug tecovirimat. In vitro experiments demonstrated that JCS-2022 had a half maximal effective concentration (EC50) of 0.05430 μmol/L (μM), comparable to tecovirimat's EC50 of 0.04794 μM. At a dosage of 1.6 μM, JCS-2022 significantly reduced VACV plaque size, indicating effective inhibition of extracellular enveloped virus (EEV) formation. Immunofluorescence analysis confirmed a reduction in VACV-induced actin tail formation. Our findings suggest that JCS-2022 is a strong candidate for development as a small molecule inhibitor against Orthopoxvirus, highlighting the potential of AI-assisted methods in accelerating drug discovery for infectious diseases.
Insights
Artificial intelligence identified JCS-2022, a novel mpox virus (MPXV) inhibitor. This drug shows promise against orthopoxviruses, comparable to tecovirimat, and could accelerate infectious disease drug discovery.
Area of Science:
- Virology
- Computational Biology
- Drug Discovery
Background:
- Mpox virus (MPXV) treatment is critical for public health, yet drug development lags behind outbreak potential.
- Orthopoxvirus research requires novel therapeutic strategies to address emerging infectious disease threats.
Purpose of the Study:
- To identify novel small molecule inhibitors against Orthopoxvirus using artificial intelligence (AI).
- To evaluate the efficacy of a newly identified compound, JCS-2022, as a potential anti-poxvirus therapeutic.
Main Methods:
- Simulated Orthopoxvirus F13 protein structures using AlphaFold v2.0.
- Employed MOE2019 software for molecular docking and identification of potential binding sites.
- Conducted in vitro experiments to assess JCS-2022 efficacy, including plaque reduction and immunofluorescence assays.
Main Results:
- Identified JCS-2022 as a promising inhibitor with structural similarities to tecovirimat.
- JCS-2022 demonstrated a potent half maximal effective concentration (EC50) of 0.05430 μM against vaccinia virus (VACV).
- JCS-2022 effectively inhibited VACV plaque formation and reduced viral actin tail formation in vitro.
Conclusions:
- JCS-2022 is a strong candidate for a small molecule inhibitor against Orthopoxvirus infections.
- AI-assisted drug discovery accelerates the identification of novel therapeutics for infectious diseases.
- This study highlights the potential of computational methods in combating viral threats like mpox.
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