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Updated: Feb 6, 2026

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products
Published on: March 12, 2020
Genome-Guided Discovery and Heterologous Biosynthesis of Alkylresorcinols by Collaborating Highly Reducing and Type
Amr A Arishi1,2, Darren C Holland1, Joe Bracegirdle1
1School of Molecular Sciences, The University of Western Australia, Perth, Western Australia 6009, Australia.
Abstract:
The rice sheath rot pathogens Sarocladium attenuatum and Sarocladium oryzae share a conserved biosynthetic gene cluster (sarc), which encodes colocalized highly reducing polyketide synthases (HR-PKSs) and type III polyketide synthases (T3PKSs). Heterologous expression of the sarc cluster in the Aspergillus nidulans strain LO8030 led to the production of six previously unreported alkylresorcinols, sarocladones A-D (1-4) and H-I (5-6), along with three putative artifacts arising from 4, sarocladones E-G (4a-4c). Biological screening revealed that 1 and 4c both exhibit mild cytotoxicity against murine NS-1 myeloma cells, with IC50 values of 13 μM and 9 μM, respectively. In addition, 1, 3, 6 and 7 displayed antiphagocytotic activity against THP1 macrophages. Subsequent bioinformatic analysis identified a homologous biosynthetic gene cluster (col) in the genome of the fungal plant pathogen Colletotrichum fructicola. To expand the structural diversity of alkylresorcinols, we employed a gene-mixing strategy, coexpressing the HR-PKS gene colA with the T3PKS gene sarcB in A. nidulans. This resulted in the production of two new sarocladone analogues, collecladones A (7) and B (8), lacking the C-2-C-3 double bond present in the sarocladones. These findings establish HR-PKS-T3PKS collaboration as an underexplored source of fungal chemical diversity.
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