Repurposing sulfonamide drugs as anticancer ligands and understanding its properties through density functional...

Drug repurposing represents a promising approach towards drug discovery that has the potential to improve patient outcomes and address unmet medical needs. This study attempted to repurpose existing sulfonamide drugs in search of novel anticancer drugs because of their effectiveness in treating bacterial infections. A search was made in DrugBank for Sulfonamide, and 25 drugs with functional groups like SH, OSO, CS, and -S- were chosen for our study. The drug properties, such as dipole moment, volume, polarisability, highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO), and electrostatic potential map, were analysed through a quantum mechanical approach at different functionals: M062X, M06HF, and B3LYP with basis sets (6-31 +G*, LANL2DZ). The electrostatic potential map was analyzed to determine the magnitude, size, and distribution of the electron cloud surrounding the sulfur atoms. Analysis of NBO (Natural Bond Orbital) and NCI (Non-Covalent Interaction) plots confirmed the presence of intramolecular hydrogen bonding in the sulfonamide drugs. Furthermore, the frontier molecular orbitals (HOMO and LUMO) and the band gap were thoroughly examined for all drugs to identify the best electron acceptors and donors. Docking analysis was performed to have a lock-and-key model of 25 sulfonamide drugs with the most promising cancer-targeted protein (1ZZ1): histone deacetylases (HDACs). The best drug orientation (optimal position) was discussed and compared with the control ligand SHH based on the analysis of binding affinity and root mean square deviation (RMSD). Binding affinity of control ligand SHH is -8.1 kcal/mol for the 2nd pose, which matches exactly with 1ZZ1 SHH ligand. The drugs Tolazamide, Fezolinetant, Ensulizole, Taurolidine, Acetohexamide, Isoxicam, Sulfamethizole, Sulfamethoxazole, Sulfapyridine, Sulfaphenazole, and Dodecyl sulphate were observed to exhibit high molecular volume, polarizability, dipole moment and significant HOMO, LUMO values, which are recommended for further quantum mechanical calculations. The findings of this study will be essential for evaluating the properties of sulfonamide drugs from a drugbank using a variety of analyses in order to repurpose them as novel anticancer drugs. Quantum mechanical calculations will be performed on the optimal docking poses in future work. Keywords: Sulfonamide drugs, Docking, Histone deacetylases, Lipinsk's rule, Binding affinity.