Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Subcellular Fractionation01:32

Subcellular Fractionation

8.9K
The homogenate obtained after cell lysis contains various membrane-bound organelles that can be further separated into pure fractions by subcellular fractionation. These isolates are used to study specific cellular components, analyze localized protein activity, and are even employed in diagnostics. Fractionation is typically achieved using centrifugation methods, the most common being density-gradient and differential centrifugation.
Differential Centrifugation
Differential centrifugation is...
8.9K
Flow Sheet01:17

Flow Sheet

2.9K
Flowsheets are valuable tools in nursing documentation. They enable healthcare professionals to efficiently record and monitor various patient assessments and measurements in a consolidated format.
Here's a closer look at the examples of flowsheets commonly used by nurses:
Graphic Sheet Documentation:
2.9K
Movement Joints in Buildings01:27

Movement Joints in Buildings

356
Movement joints in buildings are essential design elements that accommodate inevitable motions caused by various factors such as temperature changes, moisture content variations, and structural deflections. These motions, if not considered in design and construction, can lead to unsightly or dangerous damage. Movement joints are incorporated in different forms to manage these stresses and allow materials to move without causing distress.
The simplest type of movement joints, working joints, are...
356
Types of Building Stone01:30

Types of Building Stone

455
Building stones, essential materials for construction, are extracted from natural rock deposits and processed into specific forms and dimensions suitable for various building applications. These stones are broadly classified into three types based on their geological formation: igneous, sedimentary, and metamorphic.
Igneous rocks are formed from the solidification of magma or lava. An example is granite, known for its durability and resistance to weathering, making it ideal for parts of...
455
Types of Building Separation Joints01:23

Types of Building Separation Joints

622
Building separation joints divide large or complex building structures into smaller, discrete units that can move independently. These joints are categorized into three types: volume-change joints, settlement joints, and seismic separation joints.
Volume-change joints address the effects of expansion and contraction due to temperature and moisture variations. They are strategically placed at discontinuities in a building's mass where cracking is most likely and are spaced about 150 to 200...
622
Design Example: Sustainability in Concrete Building01:26

Design Example: Sustainability in Concrete Building

422
As the construction industry moves towards more eco-friendly practices, concrete's adaptability and its ability to incorporate sustainable features make it a key material in the drive towards greener building solutions.
There are multiple approaches to achieve sustainability in a commercial concrete building. For instance, construct a concrete parking area under the building, utilizing pervious concrete paver blocks in open areas to facilitate rainwater collection through an underground...
422

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Modulation of Oncogenic KRAS Signaling by Branched Actin-driven Cell Membrane Protrusions.

Research square·2026
Same author

Altair-dvOPM: an open-access platform for large-field three-dimensional tissue imaging.

bioRxiv : the preprint server for biology·2026
Same author

Modulation of Oncogenic KRAS Signaling by Branched Actin-driven Cell Membrane Protrusions.

bioRxiv : the preprint server for biology·2026
Same author

From pathology to phylogeny: Highly rearranged mitochondrial genome of the emerging testudine intranuclear coccidium.

International journal for parasitology·2026
Same author

An epithelial morphogenetic program for maximal urine concentration.

Nature communications·2026
Same author

Leptin Receptor <sup>+</sup> cells create a perisinusoidal niche for thrombopoiesis in the bone marrow by synthesizing CXCL14.

bioRxiv : the preprint server for biology·2026
Same journal

SqueakPose Studio, an end-to-end platform for pose estimation and real-time edge-AI deployment.

eLife·2026
Same journal

Mechanistic insights into transcriptional regulation of ARHGAP36 expression identify a factor predictive of neuroblastoma survival.

eLife·2026
Same journal

Activity-dependent CO<sub>2</sub> production in the axon triggers opening of Connexin32 in the Schwann cell paranode.

eLife·2026
Same journal

Lipid packing contributes to the confinement of caveolae to the plasma membrane.

eLife·2026
Same journal

A coma pattern-based autofocusing method resolves bacterial cold shock response at single-cell level.

eLife·2026
Same journal

Non-canonical amino acid incorporation enables minimally disruptive labeling of stress granule and TDP-43 proteinopathy.

eLife·2026
See all related articles

Related Experiment Video

Updated: Feb 7, 2026

Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development
08:37

Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development

Published on: May 5, 2014

23.7K

A high-resolution, easy-to-build light-sheet microscope for subcellular imaging.

John Haug1,2, Seweryn Gałecki1,2,3, Hsin-Yu Lin1,2

  • 1Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, United States.

Elife
|February 5, 2026
PubMed
Summary
This summary is machine-generated.

We developed Altair light-sheet fluorescence microscopy (LSFM), an open-source microscope for high-resolution subcellular imaging. This system simplifies assembly and alignment, enabling visualization of fine cellular structures.

Keywords:
cell biologyhumanhuman RPE-hTERT cellslight-sheet fluorescence microscopymousemouse embryonic fibroblastsopen-source hardwarevolumetric imaging

Frequently Asked Questions

More Related Videos

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution
08:16

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution

Published on: June 6, 2019

8.7K
Author Spotlight: Advancing Knowledge in Far-From-Equilibrium Materials Through Light-Sheet Microscopy
08:32

Author Spotlight: Advancing Knowledge in Far-From-Equilibrium Materials Through Light-Sheet Microscopy

Published on: January 26, 2024

3.4K

Related Experiment Videos

Last Updated: Feb 7, 2026

Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development
08:37

Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development

Published on: May 5, 2014

23.7K
Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution
08:16

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution

Published on: June 6, 2019

8.7K
Author Spotlight: Advancing Knowledge in Far-From-Equilibrium Materials Through Light-Sheet Microscopy
08:32

Author Spotlight: Advancing Knowledge in Far-From-Equilibrium Materials Through Light-Sheet Microscopy

Published on: January 26, 2024

3.4K

Area of Science:

  • Optical engineering and advanced fluorescence microscopy.
  • Cell biology applications of Altair light-sheet fluorescence microscopy.
  • Open-source hardware development for high-resolution bioimaging.

Background:

Modern biological research relies heavily on the ability to visualize intricate cellular components with high spatial and temporal precision to understand fundamental life processes. Prior research has shown that existing open-source light-sheet platforms like mesoSPIM, OpenSPIM, or OpenSpin effectively image large biological specimens such as whole embryos or cleared tissues. These established systems generally lack the resolving power necessary to distinguish individual organelles, cytoskeletal architectures, or other minute features within single cells. While Lattice Light-Sheet Microscopy (LLSM) provides the required resolution for these fine structures, its implementation remains technically demanding and often inaccessible for non-specialists. The alignment and maintenance of such sophisticated optical setups often require extensive expertise in physics or engineering, limiting their use to specialized imaging cores. Standard light-sheet designs frequently prioritize large-scale imaging over the diffraction-limited performance needed for subcellular investigations. This absence of evidence motivated the creation of a more accessible yet high-performance imaging solution for the broader scientific community.

Purpose Of The Study:

Researchers developed a high-resolution, sample-scanning Light-Sheet Fluorescence Microscopy (LSFM) system named Altair to bridge the gap between accessibility and performance in cellular imaging. The project sought to simplify the complex assembly and alignment procedures typically associated with high-end optical hardware through innovative design choices. By utilizing in silico optimization of the optical pathway, the team aimed to create a robust custom baseplate that ensures long-term stability and ease of use. The study focused on integrating streamlined optoelectronics with user-friendly, open-source software to facilitate widespread adoption across diverse laboratory settings. Engineers intended for this platform to support detailed visualization of mammalian cell interiors, including the Golgi apparatus, nuclei, and actin filaments. The design prioritizes a balance between high-resolution capabilities and the ease of construction for standard laboratory environments without specialized optical tables. This effort aimed to provide a cost-effective alternative to commercial systems while maintaining the performance metrics required for modern cell biology research.

Main Methods:

The development team utilized computational modeling and in silico optimization to refine the optical pathway before any physical construction began. A custom-machined baseplate was fabricated to ensure precise positioning of all optical components, which significantly reduces the complexity of the assembly process. The hardware incorporates streamlined optomechanics and optoelectronics controlled by a dedicated open-source software package called navigate for seamless data acquisition. To assess the system's performance, the researchers imaged sub-diffraction fluorescent nanospheres to calculate point spread functions and determine spatial resolution limits. Biological validation involved preparing mammalian cell samples using standard fixation and staining protocols to highlight specific structures like microtubules and vimentin intermediate filaments. The imaging protocol included a deconvolution step using established algorithms to enhance the final spatial resolution of the captured three-dimensional volumes. Live-cell imaging was conducted on actively migrating cells to demonstrate the system's ability to capture dynamic processes without significant phototoxicity or photobleaching.

Main Results:

Altair-LSFM achieves lateral and axial resolutions of approximately 235 and 350 nanometers, respectively, following the application of deconvolution algorithms to the raw data. The system maintains this high level of detail across a substantial 266-micrometer field of view (FOV), allowing for the simultaneous imaging of multiple cells. Validation experiments successfully resolved fine structural details within mammalian cells, such as individual actin filaments, nuclear boundaries, and microtubule networks. Imaging of the Golgi apparatus demonstrated the platform's ability to capture complex organelle morphologies with high clarity and contrast. Live-cell imaging trials effectively tracked the dynamics of microtubules and vimentin intermediate filaments in actively migrating cells over extended periods. The custom baseplate design significantly reduced the time and expertise required for initial optical alignment compared to traditional lattice light-sheet systems. Quantitative analysis of the fluorescent nanosphere data confirmed that the system operates near the theoretical diffraction limit for the chosen objective lenses.

Conclusions:

The introduction of this open-source platform provides a scalable solution for laboratories requiring high-resolution subcellular imaging without prohibitive financial or technical costs. By simplifying the alignment process through a custom baseplate, the system lowers the barrier to entry for advanced light-sheet techniques in cell biology. The researchers suggest that the modular nature of the hardware allows for future adaptations to suit diverse experimental needs, such as multi-color imaging. Integration with the navigate software ensures that data acquisition remains intuitive for researchers across various disciplines, from biophysics to clinical pathology. This development represents a significant step toward democratizing high-performance microscopy tools for the global scientific community by providing detailed build instructions. Future applications may involve expanding the system's compatibility with a wider range of fluorescent probes, specialized sample chambers, or automated high-throughput workflows. The authors conclude that Altair-LSFM offers a robust and accessible alternative to existing high-resolution light-sheet platforms for studying intracellular dynamics.

The system utilizes a sample-scanning architecture and an in silico optimized optical pathway to achieve lateral and axial resolutions of 235 nm and 350 nm, respectively. This configuration allows for the visualization of fine features like actin filaments and the Golgi apparatus within mammalian cells.

After applying deconvolution, the platform provides a field of view of 266 µm. It maintains a lateral resolution of approximately 235 nm and an axial resolution of 350 nm, enabling the detection of sub-diffraction fluorescent nanospheres and intricate cytoskeletal architectures.

The custom baseplate was designed to simplify the alignment and assembly of optical components, reducing the need for specialist expertise. The navigate software provides a streamlined interface for controlling optoelectronics, ensuring seamless operation during live-cell imaging of vimentin intermediate filaments.

Unlike mesoSPIM, which is optimized for large specimens like whole embryos, Altair-LSFM is specifically designed for high-resolution subcellular imaging. Its application is focused on resolving fine structures such as microtubules and nuclei in mammalian cells rather than large-scale tissue volumes.

The study's authors propose that this open-source, easy-to-build platform democratizes access to advanced imaging tools. They conclude that the simplified alignment and integrated software allow laboratories without extensive optical expertise to perform high-resolution studies on actively migrating cells and intracellular dynamics.