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Polygenic Traits01:18

Polygenic Traits

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When more than one gene is responsible for a given phenotype, the trait is considered polygenic. Human height is a polygenic trait. Studies have uncovered hundreds of loci that influence height, and there are believed to be many more. Due to the high number of genes involved, as well as environmental and nutritional factors, height varies significantly within a given population. The distribution of height forms a bell-shaped curve, with relatively few individuals in the population at the...
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While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
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Genome-wide Association Studies-GWAS01:11

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
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Genome and Transcriptome-Wide Analyses Identify Multiple Candidate Genes and a Significant Polygenic Contribution in

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Summary

This study identified 36 genomic loci associated with bicuspid aortic valve (BAV), a congenital heart defect. A polygenic risk score effectively predicted BAV and related cardiovascular conditions, highlighting a significant polygenic contribution.

Keywords:
RNA sequencingbicuspid aortic valvegenome-wide association studypolygenic risk scorezebrafish

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Area of Science:

  • Genetics
  • Cardiovascular Biology
  • Developmental Biology

Background:

  • Bicuspid aortic valve (BAV) is a common congenital heart defect with high heritability.
  • Genetic factors underlying BAV are not fully understood, with limited genes identified and unexplained molecular mechanisms.
  • This research aimed to elucidate the genetic architecture of BAV.

Purpose of the Study:

  • To identify novel genetic loci associated with BAV.
  • To understand the molecular mechanisms contributing to BAV development.
  • To develop and validate a polygenic risk score for BAV and related phenotypes.

Main Methods:

  • Conducted a genome-wide association study meta-analysis of 65,677 participants (9,631 cases).
  • Prioritized candidate genes using transcriptomic analysis of human aortic valves and cardiac tissues.
  • Validated gene function in zebrafish and developed a polygenic risk score evaluated in independent cohorts and UK Biobank.

Main Results:

  • Identified 36 genomic loci, including 32 novel loci for BAV.
  • KANK2, ERBB4, PRDM6, and STRN were prioritized as potentially causal genes.
  • The polygenic risk score strongly associated with BAV (OR=2.07) and related conditions like thoracic aortic aneurysm and atrial fibrillation.

Conclusions:

  • BAV has a significant polygenic component involving common variants in heart morphogenesis genes.
  • Disruption of aortic valve development results from the combined effect of these variants.
  • The findings provide insights into the genetic basis of BAV and its clinical associations.