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Related Experiment Video

Updated: Feb 9, 2026

A Standardized Procedure for Monitoring Harmful Algal Blooms in Chile by Metabarcoding Analysis
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Bridging causality and deep learning for harmful algal bloom prediction.

Pouya Zarbipour1, Mohammad Reza Nikoo2, Hassan Akbari1

  • 1School of Civil and Environmental Engineering, Tarbiat Modares University, Tehran, Iran.

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|February 7, 2026
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Summary

This study introduces a causal machine learning framework to accurately predict harmful algal blooms (HABs). The new model improves prediction accuracy and interpretability for coastal environments.

Keywords:
Algal bloomCausal inferenceCausally Informed Neural NetworkChlorophyll-aDeep learningUncertainty quantification

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Area of Science:

  • Marine science
  • Environmental monitoring
  • Machine learning

Background:

  • Accurate chlorophyll-a (Chl-a) estimation is crucial for monitoring harmful algal blooms (HABs).
  • Existing machine learning (ML) models often lack causal interpretability and robustness.

Purpose of the Study:

  • To develop an enhanced causal machine learning framework for HAB prediction.
  • To integrate causal discovery, treatment effect estimation, and deep learning.

Main Methods:

  • Developed a Causally Informed Neural Network (CINN) incorporating causal graphs and average treatment effects.
  • Utilized 31 environmental predictors from MODIS, ERA5, and HYCOM in the Persian Gulf.
  • Applied monotonic causal constraints for ecological alignment.

Main Results:

  • CINN and MCINN outperformed baseline models (Random Forests, XGBoost, SVM) with R² up to 0.926 (10-17% improvement).
  • Reduced Root Mean Square Error (RMSE) by up to 25%.
  • Causal validity of drivers like sea surface temperature and nutrient fluxes confirmed.

Conclusions:

  • The CINN framework offers an interpretable, data-efficient, and uncertainty-aware solution for HAB prediction.
  • Demonstrated potential for operational early-warning systems and policy interventions.
  • Addresses challenges in data-scarce, climate-sensitive marine environments.