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Updated: Feb 11, 2026

An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome
Published on: September 20, 2022
RPLC- and HILIC-based non-targeted metabolomics workflow for blood microsamples
Pauline Couacault1, Michael Witting2,3
1Metabolomics and Proteomics Core, Helmholtz Zentrum München, Ingostädter Landstraße 1, 85764, Neuherberg, Germany.
Blood microsampling (BμS) offers a less invasive alternative for metabolomics. Optimized extraction and LC-MS methods enhance the detection of diverse metabolites from dried blood spots and volumetric absorptive microsampling, improving coverage for various metabolic pathways.
Area of Science:
- Analytical Chemistry
- Biochemistry
- Metabolomics
Background:
- Blood microsampling (BμS) is a minimally invasive technique for analyzing endogenous metabolites.
- Dried blood spots (DBS) and volumetric absorptive microsampling (VAMS) are key BμS formats.
- BμS is suitable for metabolomics, offering an alternative to traditional blood and plasma sampling.
Purpose of the Study:
- To develop and optimize an extraction protocol for BμS for non-targeted metabolomics.
- To establish robust reversed-phase liquid chromatography/mass spectrometry (RPLC-MS) and hydrophilic interaction chromatography/mass spectrometry (HILIC-MS) methods.
- To enhance metabolite coverage for both mid- to non-polar and polar compounds.
Main Methods:
- Developed and optimized two new HILIC-MS/MS methods for polar metabolites.
- Utilized an in-house RPLC-MS method for mid- to non-polar metabolites.
- Investigated five extraction procedures and optimized the workflow for DBS and VAMS.
Main Results:
- A 15-minute HILIC-MS method with column re-equilibration was successfully developed.
- A 20% H2O/80% MeOH (v/v) mixture with sample rehydration proved effective for metabolite extraction.
- The methodology successfully detected metabolites across various pathways, including amino acids, acylcarnitines, and bile acids.
Conclusions:
- The developed extraction and LC-MS methodology provides comprehensive metabolite profiling from BμS.
- This approach enhances metabolite coverage and is applicable to both DBS and VAMS.
- The optimized protocol facilitates non-targeted metabolomics analysis using minimally invasive blood samples.
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