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Published on: December 5, 2025
Leaderless RiPPs expand the repertoire of fungal secondary metabolites
Sung Chul Park1, Livia D S Oster2, Jacob Golan3
1Department of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706.
Abstract:
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are secondary metabolites produced by bacteria, plants, animals, and fungi. Canonical fungal RiPP precursors possess a leader sequence cleaved during maturation. The first RiPPs described in fungi were the MSDIN-derived peptides responsible for the toxicity of lethal Amanita mushrooms. In this study, we upend the conventional understanding of fungal RiPPs, discovering a subclass that has diversified and lacks a leader sequence, an empirical example of leaderless RiPPs in fungi. We use a combinatorial analysis of NMR and MS/MS with an updated bioinformatic pipeline to pair MSDIN genes to leaderless peptides in Amanita phalloides, a European species spreading in California. Leaderless MSDIN transcripts are expressed several orders of magnitude more than most canonical MSDINs, with significantly higher expression in invasive populations. Our results redefine the understanding of fungal RiPP architectures and suggest differential regulation of non-canonical RiPPs may contribute to the invasion biology of the world's deadliest mushroom.
Insights
Scientists discovered a new class of leaderless fungal peptides in Amanita mushrooms. These novel peptides are highly expressed in invasive populations, potentially explaining the mushroom
Area of Science:
- Biochemistry and Molecular Biology
- Mycology
- Bioinformatics
Background:
- Ribosomally synthesized and post-translationally modified peptides (RiPPs) are diverse secondary metabolites found across kingdoms.
- Fungal RiPP precursors typically contain a leader sequence essential for maturation, as exemplified by MSDIN peptides in toxic Amanita mushrooms.
Purpose of the Study:
- To investigate novel RiPP subclasses in fungi, challenging the canonical understanding of fungal RiPP precursor structures.
- To identify and characterize leaderless RiPPs in the deadly mushroom Amanita phalloides.
Main Methods:
- Utilized a combination of Nuclear Magnetic Resonance (NMR) and tandem Mass Spectrometry (MS/MS) for structural analysis.
- Employed an updated bioinformatic pipeline to associate specific MSDIN genes with identified leaderless peptides.
- Quantified transcript expression levels of leaderless versus canonical MSDIN genes.
Main Results:
- Discovered a novel subclass of leaderless RiPPs in Amanita phalloides, representing the first empirical example in fungi.
- Established a direct link between specific MSDIN genes and these leaderless peptides.
- Observed significantly higher transcript expression for leaderless MSDINs compared to canonical ones, particularly in invasive populations.
Conclusions:
- Redefined the structural diversity of fungal RiPPs by introducing the concept of leaderless RiPPs.
- The differential regulation and high expression of non-canonical RiPPs may play a crucial role in the invasion biology of Amanita phalloides.
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