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Related Concept Videos

Hydrogen Bonds01:04

Hydrogen Bonds

15.3K
A hydrogen bond is formed when a weakly positive hydrogen atom already bonded to one electronegative atom (for example, the oxygen in the water molecule) is attracted to another electronegative atom from another polar molecule, such as water (H2O), hydrogen fluoride (HF), or ammonia (NH3). The huge electronegativity difference between the H atom (2.1) and the atom to which it is bonded (4.0 for an F atom, 3.5 for an O atom, or 3.0 for an N atom), combined with the very small size of an H atom...
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Hydrogen Bonds00:26

Hydrogen Bonds

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Hydrogen bonds are weak attractions between atoms that have formed other chemical bonds. One of these atoms is electronegative, like oxygen, and has a partial negative charge. The other is a hydrogen atom that has bonded with another electronegative atom and has a partial positive charge.
Hydrogen Bonds Control the World!
Because hydrogen has very weak electronegativity when it binds with a strongly electronegative atom, such as oxygen or nitrogen, electrons in the bond are unequally shared....
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Noncovalent Attractions in Biomolecules02:35

Noncovalent Attractions in Biomolecules

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Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
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IR Spectrum Peak Broadening: Hydrogen Bonding01:23

IR Spectrum Peak Broadening: Hydrogen Bonding

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The vibrational frequency of a bond is directly proportional to its bond strength. As a result, stronger bonds vibrate at higher frequencies, while weaker bonds vibrate at lower frequencies. The stretching vibration of the strong O–H bond in alcohols and phenols (very dilute solution or gas phase) appears as a sharp peak at 3600–3650 cm−1.
However, the extent of hydrogen bonding influences the observed stretching frequency and band broadening. Intermolecular or intramolecular...
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Predicting Molecular Geometry02:27

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VSEPR Theory for Determination of Electron Pair Geometries
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Introduction to Chemical Bonds01:01

Introduction to Chemical Bonds

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Chemical Bonds
The electrons of the outermost energy level determine the energetic stability of the atom and its tendency to form chemical bonds with other atoms. The innermost electron shell has a maximum capacity of two electrons, but the next two electron shells can each have a maximum of eight electrons. This is known as the octet rule, which states that, with the exception of the innermost shell, atoms are most stable energetically when they have eight electrons in their valence shell, the...
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Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
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Estimating the Hydrogen Bond Strength by Machine Learning Approaches.

Nahera Samangani1, Stefan Zahn1

  • 1Leibniz Institute of Surface Engineering (IOM), Permoserstraße 15, Leipzig 04318, Germany.

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This summary is machine-generated.

Machine learning models accurately predict hydrogen bond energy using molecular descriptors. Support vector regression with gradient boosting achieved a 3% error, improving upon prior methods for computational chemistry applications.

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Area of Science:

  • Computational chemistry
  • Machine learning in chemistry

Background:

  • Accurate prediction of hydrogen bond energy is crucial for understanding molecular interactions.
  • Existing methods for calculating hydrogen bond energy can be computationally expensive.

Purpose of the Study:

  • To investigate machine learning approaches for predicting hydrogen bond energy.
  • To identify key molecular descriptors that influence hydrogen bond energy.

Main Methods:

  • Utilized support vector regression combined with gradient boosting.
  • Employed Löwdin partial charges and bond orders from BLYP or B3LYP with the def2-SVP basis set.
  • Explored the semiempirical GFN2-xTB approach for Mulliken partial charges and Wiberg bond orders.

Main Results:

  • Achieved a mean absolute percentage error of 3% with the best models.
  • Demonstrated significant improvement over previous predictive models.
  • GFN2-xTB approach yielded a 4% mean absolute percentage error.

Conclusions:

  • Machine learning models can effectively predict hydrogen bond energy.
  • Specific descriptors like Löwdin partial charges and BLYP/B3LYP bond orders provide high accuracy.
  • The GFN2-xTB approach offers a viable alternative for feature generation.