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Objective Quality Assessment for Precision Functional MRI Data
Biorxiv : the Preprint Server for Biology
|February 23, 2026
Summary
We developed the Network Similarity Index (NSI) to objectively assess functional connectivity (FC) data quality for precision functional mapping (PFM). NSI ensures reliable individual brain network analysis, guiding data collection for reproducible research.
Area of Science:
- Neuroimaging
- Computational Neuroscience
- Brain Network Analysis
Background:
- Precision functional mapping (PFM) offers individualized brain network insights but demands high-quality fMRI data.
- Current criteria for assessing data sufficiency and quality for PFM are not well-defined, hindering reproducibility.
- Lack of objective metrics complicates the interpretation and replication of individual-level fMRI findings.
Purpose of the Study:
- Introduce an objective measure, the Network Similarity Index (NSI), to evaluate fMRI data quality for PFM.
- Provide a framework for NSI-based data quality assessment and PFM suitability.
- Guide decisions on data sufficiency and optimize data collection strategies in precision fMRI research.
Main Methods:
- Developed the Network Similarity Index (NSI) to quantify the integrity of large-scale network organization in individual fMRI datasets.
- Assessed NSI's alignment with expert evaluations of PFM usability and its ability to account for individual variability in functional connectivity reliability.
- Created an open-source framework for NSI implementation and developed models linking NSI values to PFM suitability.
Main Results:
- NSI objectively measures the extent to which functional connectivity patterns reflect the network structure essential for PFM.
- NSI demonstrates strong agreement with blinded expert assessments of PFM data quality.
- The NSI framework accounts for individual differences in the reliability of functional connectivity.
Conclusions:
- The NSI provides an objective, quantitative metric for evaluating fMRI data quality for precision functional mapping.
- This framework facilitates principled decisions regarding data sufficiency and optimizes data collection for reproducible individual-level brain network research.
- The open-source NSI tool enhances the reliability and interpretability of precision fMRI studies.

