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Updated: Feb 26, 2026

Reliably Engineering and Controlling Stable Optogenetic Gene Circuits in Mammalian Cells
Published on: July 6, 2021
Synthetic gene circuits that selectively target RAS-driven cancers
Gabriel Valentin Senn1, Leon Nissen1, Yaakov Benenson1
1Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Abstract:
Therapies targeting mutated rat sarcoma (RAS), the most frequently mutated oncogene in human cancers, could benefit millions of patients. Recently approved RAS inhibitors represent a breakthrough but are limited to a specific KRASG12C mutation and prone to resistance. Synthetic gene circuits offer a promising alternative by sensing and integrating cancer-specific biomolecular inputs, including mutated RAS, to selectively express therapeutic proteins in cancer cells. A key challenge for these circuits is achieving high cancer selectivity to prevent toxicity in healthy cells. To address this challenge, we present a novel approach combining multiple RAS sensors into RAS-targeting gene circuits, which allowed us to express an output protein in cells with mutated RAS with unprecedented selectivity. We implemented a modular design strategy and modeled the impact of individual circuit components on output expression. This enabled cell-line-specific adaptation of the circuits to optimize selectivity and fine-tune expression. We further demonstrate the targeting capabilities of the circuits by employing them in different RAS-driven cancer cells and provide evidence for their therapeutic potential by linking them to the expression of a clinically relevant output protein, which induced robust killing of cancer cells with mutated RAS. This work highlights the potential of synthetic gene circuits as a novel therapeutic strategy for RAS-driven cancers, advancing the application of synthetic biology in oncology.
Insights
Synthetic gene circuits precisely target mutated rat sarcoma (RAS) oncogenes in cancer cells. This novel approach enhances selectivity and therapeutic protein expression for improved cancer treatment.
Area of Science:
- Oncology
- Synthetic Biology
- Molecular Biology
Background:
- Mutated rat sarcoma (RAS) is a prevalent oncogene in human cancers, driving tumor growth.
- Current RAS inhibitors have limitations, including specificity for KRASG12C mutations and acquired resistance.
- Synthetic gene circuits offer a potential strategy for targeted cancer therapy by sensing and responding to cancer-specific signals.
Purpose of the Study:
- To develop highly selective synthetic gene circuits for targeting mutated RAS oncogenes.
- To engineer gene circuits that can integrate multiple RAS mutation signals for enhanced specificity.
- To demonstrate the therapeutic potential of these circuits in RAS-driven cancers.
Main Methods:
- Designed and implemented modular synthetic gene circuits incorporating multiple RAS sensors.
- Utilized computational modeling to optimize circuit component interactions and output expression.
- Adapted circuits for cell-line-specific performance to maximize selectivity and fine-tune expression.
- Linked circuits to the expression of a therapeutic protein for cancer cell killing.
Main Results:
- Achieved unprecedented selectivity in expressing output proteins in cells with mutated RAS.
- Demonstrated successful targeting of various RAS-driven cancer cell lines.
- Validated the therapeutic potential by inducing robust killing of cancer cells with mutated RAS.
- Showcased cell-line-specific adaptation for optimized circuit performance.
Conclusions:
- Synthetic gene circuits represent a promising novel therapeutic strategy for RAS-driven cancers.
- Combining multiple RAS sensors significantly enhances cancer cell selectivity.
- This approach advances the application of synthetic biology in oncology for targeted cancer therapies.
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