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Early Life Antibiotic Exposure and Intestinal Colonization by Enterobacteriaceae upon Admission to a Neonatal
Sergio Agudelo-Pérez1, Gloria Troncoso2, Martha Alvarez-Olmos3
1School of Medicine, Pediatrics Department, Universidad de La Sabana, Chía 250008, Colombia.
Antibiotics (Basel, Switzerland)
|February 27, 2026
Summary
Prior antibiotic exposure, especially WHO AWaRe Access antibiotics, strongly predicts intestinal colonization by multidrug-resistant Enterobacteriaceae in transferred neonates. This highlights the need for better antimicrobial stewardship and targeted screening in neonatal units.
Area of Science:
- Neonatal Medicine
- Infectious Diseases
- Antimicrobial Resistance
Background:
- Intestinal colonization by Enterobacteriaceae, including multidrug-resistant strains like ESBL-E and E-CPE, is a critical early indicator of infection risk in neonates.
- Neonates transferred from lower-complexity hospitals to referral units are particularly vulnerable to acquiring these resistant organisms.
- Understanding factors associated with colonization is crucial for developing effective prevention strategies.
Purpose of the Study:
- To identify factors associated with intestinal Enterobacteriaceae colonization in neonates admitted to a level IV neonatal referral unit in Colombia.
- To specifically investigate the impact of prior antibiotic exposure, including WHO AWaRe classification, on colonization risk.
- To analyze factors linked to colonization by extended-spectrum β-lactamase-producing (ESBL-E) and carbapenemase-producing (E-CPE) Enterobacteriaceae.
Main Methods:
- Retrospective case-control study involving 435 referred neonates screened via rectal swabs upon admission.
- Cases were neonates colonized with Enterobacteriaceae; controls were non-colonized.
- Multivariable logistic regression analyzed associations between colonization and prior antibiotic use (overall, number of agents, AWaRe classification), hospitalization duration, central catheter use, and total parenteral nutrition.
Main Results:
- Overall, 20.0% of referred neonates (87/435) were colonized, with *Klebsiella pneumoniae* and *Escherichia coli* being predominant.
- Prior antibiotic use (aOR 3.01), exposure to two agents (aOR 4.13), and use of AWaRe Access antibiotics (aOR 22.2) were strongly associated with colonization.
- AWaRe Access, Watch, and Reserve antibiotics were independently linked to ESBL-E and E-CPE colonization.
Conclusions:
- Prior antibiotic exposure, particularly WHO AWaRe-classified agents, is the most significant factor associated with intestinal Enterobacteriaceae colonization in transferred neonates.
- Strengthening antimicrobial stewardship programs in referral facilities is essential to mitigate the spread of multidrug-resistant organisms.
- Implementing risk-based screening protocols upon admission can help reduce colonization rates and subsequent infections.
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