Related Experiment Video
Updated: Feb 28, 2026

Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures
Published on: December 1, 2020
Periodic Hirshfeld Atom Refinement
Kanghyun Chu1, Dylan Jayatilaka2,3, Lorraine A Malaspina1
1Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
Periodic Hirshfeld Atom Refinement (pHAR) extends crystallographic analysis to periodic networks, improving X-H bond precision. This new method significantly increases reliable experimental data for B-H bonds.
Area of Science:
- Crystallography
- Quantum Chemistry
- Materials Science
Background:
- Hirshfeld Atom Refinement (HAR) accurately refines hydrogen atom parameters from X-ray diffraction data.
- Conventional HAR is limited to molecular crystals, excluding periodic network structures.
Purpose of the Study:
- Introduce a new variant of periodic HAR (pHAR) applicable to any periodic-network structure.
- Ensure compatibility with conventional HAR using atom-centered Gaussian orbitals and Bloch wave formalism.
Main Methods:
- Developed a new variant of periodic HAR (pHAR).
- Employed atom-centered Gaussian orbitals with a Bloch wave formalism.
- Tested pHAR against single-crystal diffraction data for boranes and borates.
Main Results:
- pHAR shows close agreement of X-H bond lengths with neutron diffraction data.
- Achieved improved precision in structural parameters for periodic networks.
- Nearly doubled the available reliable experimental data on B-H bonds.
Conclusions:
- pHAR successfully extends HAR to periodic-network structures.
- The method provides highly precise X-H bond lengths, particularly for B-H bonds.
- pHAR significantly enhances the structural analysis capabilities in crystallography.
Related Concept Videos
Atomic Orbitals
Electronic Structure of Atoms
An atom comprises protons and neutrons, which are contained inside the dense, central core called the nucleus, with electrons present around the nucleus. Taking into account the wave–particle duality of electrons and the uncertainty in position around the nucleus, quantum mechanics provides a more accurate model for the atomic structure. It describes atomic orbitals as the regions around the nucleus where electrons of discrete energy exist, characterized by four quantum...
Electron Configurations
The relative energies of the subshells determine the order in which atomic orbitals are filled (1s, 2s, 2p, 3s, 3p,...
The Aufbau Principle and Hund's Rule
Hybridization of Atomic Orbitals II
VSEPR Theory and the Basic Shapes

