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Updated: Mar 7, 2026

Chromogenic In Situ Hybridization as a Tool for HPV-Related Head and Neck Cancer Diagnosis
Published on: June 14, 2019
[HPV-related oropharyngeal cancers: main characteristics and new virological tools]
Victor Malassigné1, Imane Doghman1, Julie Balan2
1Centre de recherche des Cordeliers, Université Paris Cité, Sorbonne Université, Inserm, F-75006 Paris, France, FunGeST lab, Équipe labellisée Ligue nationale contre le cancer, Labex Onco-Immunology, Institut du Cancer Paris CARPEM, AP-HP, F-75015 Paris, France.
Abstract:
Human papillomavirus (HPV)-associated oropharyngeal squamous cell carcinomas (OPSCCs), predominantly driven by HPV16, constitute a clinically and biologically distinct entity from HPV-negative OPSCCs. Although these tumors generally exhibit a more favorable prognosis and improved response to standard treatments, approximately 10-25 % of patients experience recurrence following curative therapy. Currently, no validated biomarkers are available to identify patients at risk of relapse. This review describes: (i) the molecular bases distinguishing HPV-positive from HPV-negative OPSCCs; (ii) the heterogeneity of HPV-positive OPSCCs, with a particular focus on viral heterogeneity; and (iii) emerging molecular virological tools applicable in the context of HPV-positive OPSCCs. These viro-centric approaches include the detection and quantification of circulating tumor HPV DNA using digital PCR, as well as whole viral genome sequencing, which is instrumental for investigating viral heterogeneity within these tumors. Collectively, these tools offer promising perspectives for improving prognostic stratification and personalized monitoring of patients with HPV-positive OPSCCs. They are expected to facilitate the identification of biomarkers suitable for routine clinical use, thereby supporting therapeutic de-escalation strategies and reduced intensity of post-treatment surveillance.
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