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Published on: October 3, 2018
Chromosomal-level genome assembly of Ichthyurus bourgeoisi Gestro using PacBio HiFi and Hi-C sequencing
Yuxia Yang1,2, Yiyang Zhen3, Zheng Yang3
1Key Laboratory of Zoological Systematics and Application, College of Life Sciences, Hebei University, Baoding, 071000, Hebei Province, China. yxyang@hbu.edu.cn.
This study presents a high-quality genome assembly for Ichthyurus bourgeoisi, a beetle species. This genomic resource aids in understanding the evolution and ecological adaptations of the Ichthyurini tribe.
Area of Science:
- Genomics
- Evolutionary Biology
- Entomology
Background:
- Ichthyurus bourgeoisi is a representative of the brachelytrous beetle tribe Ichthyurini (Cantharidae).
- Limited genomic data hinders understanding of Ichthyurini evolution and adaptation.
Purpose of the Study:
- To generate a chromosome-level genome assembly for Ichthyurus bourgeoisi.
- To provide a foundational genomic resource for studying beetle evolution and adaptation.
Main Methods:
- PacBio HiFi and Hi-C sequencing technologies were employed.
- Bioinformatic analyses were used for assembly, scaffolding, and gene annotation.
Main Results:
- A 664.72 Mb genome assembly was produced, organized into seven pseudo-chromosomes, including chromosome X.
- The assembly contains 65.35% repeat sequences and 13,386 protein-coding genes.
- High metrics for genome size, read mapping, and BUSCO completeness (98.6%) validate the assembly quality.
Conclusions:
- The high-quality genome assembly of I. bourgeoisi is a valuable resource.
- This resource will facilitate research into the ecological adaptations and morphological evolution of Ichthyurini beetles.
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