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Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification
Published on: November 15, 2017
Blood proteomics: insights from public data
Asier Larrea-Sebal1,2,3, Chengxin Dai4,5, Alejandro J Brenes6
1European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
This study reviews blood proteomics data, highlighting its complexity and potential for personalized medicine. It examines current methods and data sources while addressing challenges for future clinical applications.
Area of Science:
- Biochemistry
- Proteomics
- Molecular Biology
Background:
- The blood proteome contains vital information on physiological and pathological conditions.
- Publicly available blood proteomics datasets are growing due to technological advancements.
Purpose of the Study:
- To review the complexity of blood proteomics data.
- To assess current methodologies and data integration strategies.
- To identify challenges in translating blood proteomics to personalized medicine.
Main Methods:
- Literature review of public blood proteomics resources.
- Analysis of mass spectrometry and affinity-based proteomics techniques.
- Evaluation of data complementarity across different abundance levels.
Main Results:
- Blood proteomics data exhibit significant cellular and molecular complexity.
- Diverse data sources offer complementary insights across the abundance spectrum.
- Existing datasets have limitations for comprehensive assessment.
Conclusions:
- Blood proteomics holds promise for personalized medicine.
- Further methodological development and data integration are crucial.
- Addressing current challenges is key to clinical translation.
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