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Related Concept Videos

Predicting Reaction Outcomes02:24

Predicting Reaction Outcomes

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Kinetics describes the rate and path by which a reaction occurs. In contrast, thermodynamics deals with state functions and describes the properties, behavior, and components of a system. It is not concerned with the path taken by the process and cannot address the rate at which a reaction occurs. Although it does provide information about what can happen during a reaction process, it does not describe the detailed steps of what appears on an atomic or a molecular level. On the other hand,...
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Entropy is a state function, so the standard entropy change for a chemical reaction (ΔS°rxn) can be calculated from the difference in standard entropy between the products and the reactants.
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Chemical Reactions01:19

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A chemical reaction is a process by which the bonds in the atoms of substances are rearranged to generate new substances. Matter cannot be created or destroyed in a chemical reaction—the same type and number of atoms that make up the reactants are still present in the products. Merely, the rearrangement of chemical bonds produces new compounds.
Chemical Reactions Rearrange Atoms into New Substances
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A balanced chemical equation provides the information of chemical formulas of the reactants and products involved in the chemical change. A reaction’s stoichiometry helps predict how much of the reactant is needed to produce the desired amount of product, or in some cases, how much product will be formed from a specific amount of the reactant.
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Measuring Reaction Rates03:09

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Polarimetry finds application in chemical kinetics to measure the concentration and reaction kinetics of optically active substances during a chemical reaction. Optically active substances have the capability of rotating the plane of polarization of linearly polarized light passing through them—a feature called optical rotation. Optical activity is attributed to the molecular structure of substances. Normal monochromatic light is unpolarized and possesses oscillations of the electrical...
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Dynamic Equilibrium02:20

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A reversible chemical reaction represents a chemical process that proceeds in both forward (left to right) and reverse (right to left) directions. When the rates of the forward and reverse reactions are equal, the concentrations of the reactant and product species remain constant over time and the system is at equilibrium. A special double arrow is used to emphasize the reversible nature of the reaction. The relative concentrations of reactants and products in equilibrium systems vary greatly;...
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Related Experiment Video

Updated: Mar 18, 2026

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

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Uncertainty-Driven Deep-Ensemble Temporal Convolutional Networks for Predicting Chemical Reaction Dynamics.

Zhengzheng Dang1, Lei Cheng2, Zhichen Tang1

  • 1Global College, Shanghai Jiao Tong University, Shanghai 200240, China.

Journal of Chemical Theory and Computation
|March 16, 2026
PubMed
Summary
This summary is machine-generated.

We developed DEAL-TCN, a machine learning framework for predicting chemical reaction dynamics. This method improves long-term accuracy and reduces data generation costs for complex simulations.

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Area of Science:

  • Scientific computing
  • Chemical engineering
  • Materials science

Background:

  • Chemical reaction dynamics are crucial for energy, environment, and materials technologies.
  • Reactive molecular dynamics (RMD) simulations capture these dynamics but face challenges in data generation and prediction accuracy.
  • Time-series machine learning models struggle with error accumulation in long-horizon predictions.

Purpose of the Study:

  • To introduce DEAL-TCN (deep-ensemble active learning with temporal convolutional networks), an active-learning framework designed to predict chemical species evolution.
  • To effectively handle the high-dimensional complexity of reaction dynamics across species, time, and operating conditions.
  • To enable efficient modeling and accurate long-term prediction of species evolution in RMD simulations.

Main Methods:

  • DEAL-TCN employs a query-by-committee strategy for selecting informative simulation conditions.
  • It utilizes one-dimensional temporal convolutions to model interspecies and long-timescale couplings.
  • The framework integrates deep ensemble learning with active learning for efficient data selection and model training.

Main Results:

  • DEAL-TCN accurately predicts chemical species concentration evolution for Mo-O-S precursors across a wide parameter range.
  • The model achieves a mean prediction error of 4.8% at the picosecond level and 18.2% over 0.45 ns, outperforming LSTM and Transformer architectures.
  • DEAL-TCN significantly outperforms random sampling in active-learning efficiency, improving results in 98.8% of iterations.

Conclusions:

  • DEAL-TCN offers a scalable and generalizable approach for mechanistic discovery in chemical reactions.
  • The framework enhances reaction design and optimization by providing accurate long-term predictions.
  • This method addresses key limitations in RMD data generation and machine learning prediction accuracy.