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ToxiVerse: A Public Platform for Chemical Toxicity Data Sharing and Customizable Predictive Modeling
Prasannavenkatesh Durai1, Daniel P Russo2, Yitao Shen1,2
1Center for Biomedical Informatics and Genomics, Tulane University School of Medicine, New Orleans, LA 70112, United States.
ToxiVerse is a new web platform offering user-friendly tools for computational toxicology. It aids researchers in chemical toxicity assessment using machine learning models and curated datasets, reducing reliance on animal testing.
Area of Science:
- Computational toxicology and cheminformatics
- Drug development and environmental safety assessment
- Machine learning applications in chemical research
Background:
- Chemical toxicity assessment is crucial for drug development and environmental safety.
- Computational models offer an alternative to animal testing for chemical evaluation.
- There is a need for accessible machine learning tools in computational toxicology.
Purpose of the Study:
- To develop ToxiVerse, a public web-based platform for computational toxicology.
- To provide user-friendly tools for chemical bioprofiling and toxicity prediction.
- To support researchers lacking programming expertise in chemical safety evaluation.
Main Methods:
- Integrated platform with Bioprofiler, Database, and Cheminformatics modules.
- Bioprofiler module uses chemical-bioactivity data and machine learning for descriptors.
- Cheminformatics module enables data upload, curation, and Quantitative Structure-Activity Relationship (QSAR) model generation.
Main Results:
- ToxiVerse provides curated toxicity datasets for approximately 50,000 chemicals.
- The platform facilitates automatic chemical bioprofiling and QSAR model generation.
- Users can access data, perform chemical curation, and predict toxicity endpoints.
Conclusions:
- ToxiVerse empowers researchers with accessible tools for chemical toxicity assessment.
- The platform enhances chemical bioprofiling and machine learning-based toxicity prediction.
- ToxiVerse supports efficient chemical safety evaluation, reducing the need for animal testing.
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