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Cardinality-based sparse singular value decomposition for similarity matrices
Joseph Boccardo1, William Tanberg1, Jeffrey C Miecznikowski1
1Department of Biostatistics, SUNY University at Buffalo, Buffalo, NY, USA.
We introduce cardinality-based singular value decomposition (SVD) for sparse eigenvector analysis. This method identifies impactful variables by creating sparse singular vectors, extending principal component analysis (PCA) capabilities.
Area of Science:
- Data Science
- Linear Algebra
- Machine Learning
Background:
- Sparse decomposition methods are crucial in principal component analysis (PCA) for identifying key variables.
- Existing PCA-based methods often rely on regularization parameters or direct cardinality choices for sparse eigenvectors.
- PCA's applicability is limited in certain scenarios, such as analyzing cross-correlation matrices.
Purpose of the Study:
- To extend cardinality-based sparse decomposition from PCA to singular value decomposition (SVD).
- To enable direct control over the sparsity (cardinality) of both left and right singular vectors.
- To enhance SVD for analyzing continuous data matrices, especially cross-correlation matrices.
Main Methods:
- Developed a cardinality-based SVD approach allowing independent specification of left and right singular vector cardinalities.
- Extended the method to support SVD approximations beyond rank-1.
- Enabled the creation of matrices containing sparse left and right singular vectors.
Main Results:
- Successfully generated sparse singular vectors that highlight the most impactful variables in a dataset.
- Demonstrated the ability to control the number of non-zero elements in singular vectors.
- Extended the technique to multi-rank SVD approximations, producing sparse left and right matrices.
Conclusions:
- Cardinality-based SVD offers a flexible and powerful alternative to PCA for sparse decomposition.
- The method effectively identifies significant variables by creating sparse singular vectors.
- This approach broadens the utility of sparse decomposition techniques to a wider range of data analysis problems.
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