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Enhancing intrusion detection in encrypted DoH traffic through a robust ensemble learning framework
Hussein Abrahim1, Weiyan Hou1, Yan Zhuang2
1School of Electrical & Information Engineering, Zhengzhou University, Zhengzhou, China.
Plos One
|April 7, 2026
Summary
This study introduces a stacked ensemble model to detect malicious traffic hidden in DNS over HTTPS (DoH) encrypted channels. The advanced framework accurately identifies threats, enhancing network security against covert tunneling.
Area of Science:
- Cybersecurity
- Machine Learning
Background:
- DNS over HTTPS (DoH) encrypts queries, improving privacy but enabling covert malicious traffic.
- Detecting such encrypted malicious traffic poses significant challenges for network security.
Purpose of the Study:
- To develop a highly accurate and computationally efficient method for detecting malicious tunneling within DoH traffic.
- To propose a stacked ensemble machine learning approach for identifying covert DoH channels.
Main Methods:
- Employed a stacked ensemble model with Long Short-Term Memory (LSTM) and Gated Recurrent Unit (GRU) networks as base learners and XGBoost as a meta-learner.
- Utilized Recursive Feature Elimination (RFE) with XGBoost for feature selection, reducing dimensionality from 29 to 13/20 features.
- Applied stratified 5-fold cross-validation for robust model training and evaluation.
Main Results:
- Achieved near-perfect performance metrics (e.g., recall, F1-score, AUC-PR/ROC) on both CIRA-CIC-DoHBrw-2020 and DoH-Tunnel-Traffic-HKD datasets.
- The proposed model significantly outperformed individual base classifiers, other ML models, and existing state-of-the-art methods.
- Demonstrated computational efficiency with training times of 1.26s and inference times of 0.129s on the HKD-DoH dataset.
Conclusions:
- The stacked ensemble framework provides a highly accurate and efficient solution for intrusion detection in encrypted DoH traffic.
- The model effectively addresses the challenge of detecting malicious activities masked by DoH encryption.
- The study offers a practical tool for real-world network security applications.