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QuantumXCT: Learning Interaction-Induced State Transformation in Cell-Cell Communication via Quantum Entanglement and

Selim Romero1,2,3, Shreyan Gupta1,3, Robert S Chapkin2,3

  • 1Department of Veterinary Integrative Biosciences, Texas A&M University.

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Summary
This summary is machine-generated.

QuantumXCT, a novel quantum framework, infers cell-cell communication by learning state transformations, not just co-expression. This advances single-cell biology by discovering communication pathways without prior assumptions.

Keywords:
BioinformaticsQuantum ComputingQuantum Machine LearningSingle-cell

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Area of Science:

  • Computational Biology
  • Quantum Machine Learning
  • Single-Cell Genomics

Background:

  • Current cell-cell communication (CCC) inference relies on ligand-receptor databases, limiting discovery to known interactions and co-expression patterns.
  • Existing methods fail to capture system-level signaling effects on cellular states.

Purpose of the Study:

  • To introduce QuantumXCT, a hybrid quantum-classical generative framework for inferring CCC by learning interaction-induced state transformations.
  • To enable de novo discovery of communication programs in complex biological systems.

Main Methods:

  • QuantumXCT encodes transcriptomic profiles into a Hilbert space.
  • Parameterized quantum circuits learn unitary transformations mapping non-interacting to interacting cellular states.
  • The framework models CCC as learning state transformations between cellular distributions.

Main Results:

  • QuantumXCT accurately recovers complex regulatory dependencies and feedback structures from synthetic and real-world data.
  • Identified key communication hubs, including the PDGFB-PDGFRB-STAT3 axis in ovarian cancer-fibroblast co-cultures.
  • The quantum circuit's topology provides interpretable interaction networks and quantifies influence.

Conclusions:

  • QuantumXCT offers a generative framework for modeling intercellular communication by learning data-driven state transformations.
  • This approach overcomes limitations of static interaction lookup, establishing a new paradigm for CCC discovery.
  • Highlights the potential of quantum machine learning in advancing single-cell biology research.