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Bone Structure01:55

Bone Structure

Within the skeletal system, the structure of a bone, or osseous tissue, can be exemplified in a long bone, like the femur, where there are two types of osseous tissue: cortical and cancellous.
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Related Experiment Video

Updated: May 20, 2026

Outer-Boundary Assisted Segmentation and Quantification of Trabecular Bones by an Imagej Plugin
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Datasets for acquiring 3D bone shapes: a systematic review.

Seyed Hamidreza Alavi1, Gabriëlle J M Tuijthof1, Nico J J Verdonschot2

  • 1Department of Biomechanical Engineering, University of Twente, the Netherlands.

Journal of Biomechanics
|April 12, 2026
PubMed
Summary
This summary is machine-generated.

Finding 3D human bone shape datasets is challenging due to scattered sources. This study identifies 152 datasets, highlighting a need for better organization and more mesh/CAD models for research.

Keywords:
3D model3D shapeBoneCTDatasetMRI

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Area of Science:

  • Biomedical Engineering
  • Medical Imaging
  • Data Science

Background:

  • Three-dimensional (3D) human bone shapes are critical for engineering, preclinical, and clinical applications.
  • Existing 3D bone datasets are fragmented across numerous sources with inconsistent documentation, hindering accessibility.

Purpose of the Study:

  • To systematically identify and analyze publicly available datasets containing 3D human bone shapes or imaging data (CT/MRI) suitable for generating 3D models.
  • To provide a comprehensive overview of the current landscape of these datasets, including their specifications and limitations.

Main Methods:

  • A systematic search was performed across academic databases (Scopus, Web of Science, PubMed), data repositories (Zenodo, Mendeley Data), and the Grand Challenge platform.
  • Dataset specifications, including data formats, imaged regions, modalities, subject metadata, and usage policies, were extracted and analyzed.

Main Results:

  • 152 datasets covering over 371,000 subjects were identified. Of these, 44 contained 3D bone shapes, primarily as voxel segmentation masks (30 datasets) or surface meshes (5 datasets).
  • No datasets offered computer-aided design (CAD) models. The spinal column was the most represented anatomical region (28 datasets), while the thorax was the least (10 datasets).

Conclusions:

  • Publicly available 3D bone shape datasets are highly dispersed, complicating their discovery and use.
  • A significant gap exists in the availability of mesh and CAD models, which are crucial for advancing orthopaedic, biomechanical, and engineering research.
  • This review consolidates dataset specifications into a guide (github.com/BoneHub/Public-Datasets) to improve resource identification, comparison, and utilization.