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Updated: Apr 23, 2026

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Liquid biopsy-based detection of acquired MET resistance enables sequential targeted therapy in MET fusion-positive
Stanislav Rosnev1,2, Katharina Klein1,2, Lukas Heukamp3
1Department of Hematology, Oncology and Cancer Immunology, Campus Benjamin Franklin, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin 12203, Germany.
Abstract:
Oncogenic alterations in MET represent therapeutically actionable driver alterations in non-small cell lung cancers (NSCLC). Among these, MET fusions are rare, occurring in approximately 0.1%-0.3% of NSCLC. We report the case of a 52-year-old woman with metastatic, TTF1-positive lung adenocarcinoma harboring a KIF5B::MET fusion. After progression on chemotherapy and immunotherapy, she achieved a durable response lasting nearly five years on third-line treatment with the type Ia MET inhibitor crizotinib. At the time of suspected disease progression, two tissue re-biopsies were non-diagnostic due of insufficient tumor cell content. Circulating tumor DNA (ctDNA) analysis identified two newly acquired on-target resistance mutations within the MET kinase domain (L1213V and Y1248C) in addition to the known KIF5B::MET fusion. After re-evaluation by the institutional molecular tumor board, both alterations were considered mediators of resistance to type I MET inhibitors, with available data indicating preserved sensitivity to type II inhibitors. Based on these findings, the patient was switched to cabozantinib, a multikinase type II MET inhibitor, resulting in a radiographic disease stabilization accompanied by a marked decline in tumor marker levels. This case illustrates the clinical utility of liquid biopsy for molecular resistance monitoring, particularly when tissue re-biopsy is not feasible, supports its integration into clinical decision-making, and underscores the therapeutic relevance of MET inhibitor class-switch strategies in MET fusion-positive disease.
Insights
A rare MET fusion in non-small cell lung cancer (NSCLC) responded to crizotinib for nearly five years. Liquid biopsy detected resistance mutations, guiding a switch to cabozantinib for disease stabilization.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Oncogenic MET alterations are actionable drivers in non-small cell lung cancer (NSCLC).
- MET fusions are rare driver alterations in NSCLC, found in 0.1-0.3% of cases.
- MET inhibitors offer therapeutic strategies for NSCLC patients with MET alterations.
Purpose of the Study:
- To report a case of a MET fusion-positive NSCLC patient.
- To illustrate the role of liquid biopsy in monitoring treatment resistance.
- To highlight the efficacy of MET inhibitor class-switching strategies.
Main Methods:
- Case report of a 52-year-old woman with metastatic lung adenocarcinoma.
- Treatment with chemotherapy, immunotherapy, crizotinib (type Ia MET inhibitor), and cabozantinib (type II MET inhibitor).
- Monitoring via tissue biopsy and circulating tumor DNA (ctDNA) analysis.
Main Results:
- The patient achieved a durable response to crizotinib for nearly five years.
- ctDNA analysis revealed acquired MET resistance mutations (L1213V, Y1248C) upon progression.
- Switching to cabozantinib led to disease stabilization and decreased tumor markers.
Conclusions:
- Liquid biopsy is crucial for monitoring resistance when tissue biopsy is unfeasible.
- MET inhibitor class-switching is a viable strategy for managing resistance in MET fusion-positive NSCLC.
- This case underscores the clinical utility of advanced molecular profiling and targeted therapy selection.
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