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In silico QSAR-guided design of Dammarane-type triterpenoids as potential PI3Kα-targeted anticancer agents
Mouad Lahyaoui1, Mohamed El Yaqoubi1, Hajar Lahyaoui2
1Laboratory of Applied Organic Chemistry, Faculty of Science and Technology, Sidi Mohamed Ben Abdellah University, USMBA, Po. Box 2626, Fez, Morocco.
Abstract:
Cancer remains a major global health challenge, driven in part by dysregulation of key oncogenic signaling pathways such as phosphatidylinositol 3-kinase alpha (PI3Kα), which plays a central role in tumor growth and therapeutic resistance. In this study, an integrative computational strategy combining quantitative structure-activity relationship (QSAR) modeling, drug-likeness and ADMET prediction, and molecular docking was applied to investigate dammarane-type triterpenoid derivatives as potential PI3Kα inhibitors. A dataset of 22 reported compounds was analyzed using multiple linear regression (MLR), partial least squares (PLS), and principal component regression (PCR) models, all of which were rigorously validated by external test sets, Y-randomization, and applicability domain analysis, with the PCR model showing the highest predictive performance (R2 = 0.833; R2_test= 0.79). Descriptor analysis identified lipophilicity, electronic distribution, and polar surface properties as key determinants of anticancer activity, while excessive molecular size negatively influenced potency. Guided by these insights, four new derivatives (D1-D4) were rationally designed and evaluated in silico, exhibiting favorable drug-likeness, high predicted oral absorption (89-100%), absence of AMES toxicity, and moderate synthetic accessibility. Molecular docking against PI3Kα (PDB ID: 8TSB) revealed stable binding for all designed compounds, with D1 emerging as the most promising lead, combining strong binding affinity (-5.70 kcal/mol) and favorable interaction patterns within the active site. Overall, this work demonstrates the potential of dammarane-type triterpenoids as PI3Kα-targeted anticancer agents and highlights the value of an integrated, cost-effective computational framework for rational lead identification and optimization, supporting future experimental development in line with global health priorities.
Insights
This study identifies novel dammarane-type triterpenoid derivatives as potential inhibitors of phosphatidylinositol 3-kinase alpha (PI3Kα) for cancer therapy. Computational modeling guided the design of promising new compounds with favorable drug properties and strong binding affinity.
Area of Science:
- Medicinal Chemistry
- Computational Chemistry
- Oncology
Background:
- Cancer is a major global health challenge.
- Dysregulation of phosphatidylinositol 3-kinase alpha (PI3Kα) signaling drives tumor growth and therapeutic resistance.
- Dammarane-type triterpenoids are explored for anticancer potential.
Purpose of the Study:
- To investigate dammarane-type triterpenoid derivatives as potential PI3Kα inhibitors using computational methods.
- To identify key molecular descriptors influencing anticancer activity against PI3Kα.
- To rationally design and evaluate novel PI3Kα inhibitors.
Main Methods:
- Quantitative Structure-Activity Relationship (QSAR) modeling (MLR, PLS, PCR) was employed.
- Drug-likeness, ADMET predictions, and molecular docking were utilized.
- A dataset of 22 compounds was analyzed and validated rigorously.
Main Results:
- The PCR model demonstrated high predictive performance (R²=0.833, R²_test=0.79).
- Lipophilicity, electronic, and polar surface properties were key activity determinants; molecular size was inhibitory.
- Four new derivatives (D1-D4) showed good drug-likeness, high oral absorption, and no AMES toxicity.
- Compound D1 exhibited strong binding affinity (-5.70 kcal/mol) to PI3Kα.
Conclusions:
- Dammarane-type triterpenoids show promise as PI3Kα-targeted anticancer agents.
- An integrated computational approach facilitates rational drug lead identification and optimization.
- This study supports the development of novel cancer therapeutics.
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