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Integrating Untargeted GC-MS Metabolomics, GNPS Molecular Networking, and Machine Learning for Sugarcane Byproduct
Thapanee Pruksatrakul1, Chanakarn Sangsum1, Sasina Makmai1
1National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani 12120, Thailand.
ACS Omega
|April 27, 2026
Summary
This study optimizes sugarcane residue valorization by matching extraction solvents with biomass types, identifying high-value compounds like lipids and phenolics for a sustainable circular economy.
Area of Science:
- Agricultural Chemistry
- Biotechnology
- Environmental Science
Background:
- Sugarcane industry generates significant waste, presenting environmental challenges.
- Circular economy and zero-waste principles necessitate effective residue valorization.
- Metabolomic profiling offers a powerful approach to understanding complex biomass composition.
Purpose of the Study:
- To explore the valorization of sugarcane residues using solvent-based extraction and metabolomic profiling.
- To identify optimal solvent-biomass pairings for recovering high-value compounds.
- To develop a data-driven framework for sustainable biorefinery processes.
Main Methods:
- Solvent-based extraction of metabolites from various sugarcane parts.
- Gas chromatography-mass spectrometry (GC-MS) with BSTFA derivatization for metabolite analysis.
- Automated spectral deconvolution, molecular networking (MSHub, GNPS, Cytoscape), and machine learning for data analysis.
Main Results:
- Specific solvent-biomass combinations significantly impacted yield and recovery of high-value compounds (policosanols, phytosterols, triterpenoids, phenolic acids).
- Sugarcane trash and filter cake showed promise for lipid-based compound recovery.
- Methanol and ethanol offered high extraction efficiency, while nonpolar solvents selectively enriched sterols and long-chain alcohols.
Conclusions:
- A data-driven framework integrating molecular data and statistical modeling enhances sugarcane residue valorization.
- Optimizing solvent systems for specific biomass types improves biorefinery efficiency and economic value.
- Findings contribute to the environmental sustainability of sugarcane waste management through effective valorization.

